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(-) Description

Title :  1.5 A CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION ATU1052 FROM AGROBACTERIUM TUMEFACIENS
 
Authors :  R. Zhang, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak, Midw Center For Structural Genomics (Mcsg)
Date :  10 May 06  (Deposition) - 20 Jun 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Agrobacterium Tumefaciens, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
1. 5A Crystal Structure Of A Hypothetical Protein Atu1052 From Agrobacterium Tumefaciens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN ATU1052
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: STR. C58

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GZ4)

(-) Sites  (0, 0)

(no "Site" information available for 2GZ4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GZ4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly C:105 -Gly C:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GZ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GZ4)

(-) Exons   (0, 0)

(no "Exon" information available for 2GZ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
 aligned with Q7D028_AGRFC | Q7D028 from UniProtKB/TrEMBL  Length:195

    Alignment length:200
                                   1                                                                                                                                                                                                
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
         Q7D028_AGRFC     - -------MLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRTGG 193
               SCOP domains d2gz4a1 A:6-205 Hypothetical protein Atu1052                                                                                                                                                             SCOP domains
               CATH domains 2gz4A00 A:6-205 Hypothetical protein af1432                                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.....eee....hhhhhhhhhhhhhhh...hhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhh..hhhhhhh.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gz4 A   6 SPRAWQRMLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRTGG 205
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205


Chain B from PDB  Type:PROTEIN  Length:198
 aligned with Q7D028_AGRFC | Q7D028 from UniProtKB/TrEMBL  Length:195

    Alignment length:198
                                   1                                                                                                                                                                                              
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183        
         Q7D028_AGRFC     - -------MLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRT 191
               SCOP domains d2gz4b_ B: Hypothetical protein Atu1052                                                                                                                                                                SCOP domains
               CATH domains 2gz4B00 B:6-203 Hypothetical protein af1432                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee.....eee....hhhhhhhhhhhhhhh...hhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gz4 B   6 SPRAWQRMLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRT 203
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195        


Chain C from PDB  Type:PROTEIN  Length:196
 aligned with Q7D028_AGRFC | Q7D028 from UniProtKB/TrEMBL  Length:195

    Alignment length:196
                                   1                                                                                                                                                                                            
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183      
         Q7D028_AGRFC     - -------MLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVT 189
               SCOP domains d2gz4c_ C: Hypothetical protein Atu1052                                                                                                                                                              SCOP domains
               CATH domains 2gz4C00 C:6-201 Hypothetical protein af1432                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.....eee....hhhhhhhhhhhhhhh...hhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhh..hhhhhh....hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gz4 C   6 SPRAWQRMLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVT 201
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      


Chain D from PDB  Type:PROTEIN  Length:197
 aligned with Q7D028_AGRFC | Q7D028 from UniProtKB/TrEMBL  Length:195

    Alignment length:197
                                 1                                                                                                                                                                                               
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       
         Q7D028_AGRFC     - -----MLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRTG 192
               SCOP domains d2gz4d_ D: Hypothetical protein Atu1052                                                                                                                                                               SCOP domains
               CATH domains 2gz4D00 D:8-204 Hypothetical protein af1432                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....eee....hhhhhhhhhhhhhhh...hhhhh.......hhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhh..hhhhhh....hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gz4 D   8 RAWQRMLSGRRLDLLDPSPLDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTVEKRLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATELAGFSTAEAQKFFGLPRGITRDMFDIIPLPSTEAQRLFIARFEAIETLRVTRTG 204
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GZ4)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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    Gly C:105 - Gly C:106   [ RasMol ]  
 
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