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(-) Description

Title :  CP4 EPSP SYNTHASE LIGANDED WITH S3P AND GLYPHOSATE
 
Authors :  E. Schonbrunn, T. Funke
Date :  23 Mar 06  (Deposition) - 22 Aug 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Inside-Out Alpha/Beta Barrel; Two Domain Structure, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Funke, H. Han, M. L. Healy-Fried, M. Fischer, E. Schonbrunn
Molecular Basis For The Herbicide Resistance Of Roundup Ready Crops.
Proc. Natl. Acad. Sci. Usa V. 103 13010 2006
PubMed-ID: 16916934  |  Reference-DOI: 10.1073/PNAS.0603638103

(-) Compounds

Molecule 1 - 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE
    Chains: A
    EC Number: 2.5.1.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AROA
    Organism Scientific: AGROBACTERIUM SP.
    Organism Taxid: 268951
    Strain: CP4
    Synonym: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE, EPSP SYNTHASE, EPSPS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GPJ1Ligand/IonGLYPHOSATE
2S3P1Ligand/IonSHIKIMATE-3-PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:28 , SER A:29 , ARG A:33 , THR A:101 , SER A:173 , ALA A:174 , GLN A:175 , ASP A:326 , LYS A:353 , GPJ A:701 , HOH A:757 , HOH A:770 , HOH A:775 , HOH A:780 , HOH A:790 , HOH A:816BINDING SITE FOR RESIDUE S3P A 601
2AC2SOFTWARELYS A:28 , ASN A:98 , ALA A:99 , ALA A:100 , THR A:101 , ARG A:128 , GLN A:175 , ASP A:326 , GLU A:354 , ARG A:357 , HIS A:404 , ARG A:405 , S3P A:601 , HOH A:733 , HOH A:770 , HOH A:845BINDING SITE FOR RESIDUE GPJ A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GGA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:152 -Pro A:153

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GGA)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EPSP_SYNTHASE_1PS00104 EPSP synthase signature 1.AROA_AGRSC94-108  1A:94-108
2EPSP_SYNTHASE_2PS00885 EPSP synthase signature 2.AROA_AGRSC351-369  1A:351-369

(-) Exons   (0, 0)

(no "Exon" information available for 2GGA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:445
 aligned with AROA_AGRSC | Q9R4E4 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:445
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445     
           AROA_AGRSC     6 SSRPATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAKIELS 450
               SCOP domains d2ggaa_ A: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2ggaA01               2ggaA02 A:28-241  [code=3.65.10.10, no name defined]                                                                                                                                                                  2ggaA01 A:6-27,A:242-450  [code=3.65.10.10, no name defined]                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....eeeee...hhhhhhhhhhhhhhheeeeeee....hhhhhhhhhhhhhh..eeeee..eeeeeee...........ee...hhhhhhhhhhhhhh...eeeee...hhhhh.hhhhhhhhhhh..eeeee...eeeeeee........eee....hhhhhhhhhhhhh....eeeeee.....hhhhhhhhhh...eeeee.....eeeeee........eee...hhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhh..eeeeeeeeee..eeeeeeeee.......eehhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhh..hhhhhhhhhhhhh..eeee....eeee..............ee....hhhhhhhhhhhhh.....eee....hhhhh..hhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    --------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gga A   6 SSRPATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAKIELS 450
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GGA)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (AROA_AGRSC | Q9R4E4)
molecular function
    GO:0003866    3-phosphoshikimate 1-carboxyvinyltransferase activity    Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016765    transferase activity, transferring alkyl or aryl (other than methyl) groups    Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0009423    chorismate biosynthetic process    The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
    GO:0009635    response to herbicide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AROA_AGRSC | Q9R4E4: 2gg4 2gg6 2ggd 2pqb 2pqc 2pqd

(-) Related Entries Specified in the PDB File

1g6s 1g6t 1gg4 1mi4 1q36 1rf5 1rf6 2gg6 2ggd