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(-) Description

Title :  STRUCTURE OF A PUTATIVE CELL FILAMENTATION PROTEIN FROM NEISSERIA MENINGITIDIS.
 
Authors :  M. E. Cuff, L. Bigelow, M. Bargassa, A. Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
Date :  10 Feb 06  (Deposition) - 21 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Filamentation, Cell Division, Chromosome Partitioning, Fic Protein Family, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, L. Bigelow, M. Bargassa, A. Joachimiak
Structure Of A Putative Cell Filamentation Protein From Neisseria Meningitidis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN NMA0004
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FIC
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 122586
    Strain: MC58

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2IPA1Ligand/IonISOPROPYL ALCOHOL
3MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:30 , ARG A:33 , GLN A:44 , HOH A:377BINDING SITE FOR RESIDUE IPA A 204
2AC2SOFTWAREPHE A:70 , ASN A:104 , GLU A:148 , ACY A:207BINDING SITE FOR RESIDUE ACY A 205
3AC3SOFTWAREASP A:170 , ASN A:171 , ARG A:172 , GLU A:173BINDING SITE FOR RESIDUE ACY A 206
4AC4SOFTWAREASN A:104 , HIS A:107 , MSE A:147 , GLU A:186 , ACY A:205 , ACY A:208BINDING SITE FOR RESIDUE ACY A 207
5AC5SOFTWAREHIS A:107 , GLU A:111 , GLY A:112 , ASN A:113 , GLY A:114 , ACY A:207 , HOH A:223 , HOH A:246 , HOH A:342 , HOH A:362BINDING SITE FOR RESIDUE ACY A 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2G03)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2G03)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2G03)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIDOPS51459 Fido domain profile.NMFIC_NEIMB37-162  1A:37-162

(-) Exons   (0, 0)

(no "Exon" information available for 2G03)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
 aligned with NMFIC_NEIMB | Q7DDR9 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:177
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       
          NMFIC_NEIMB    11 MKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTDDVDNREIIFKGIEQSYYYEG 187
               SCOP domains d2g03a1 A:11-187 Hypothetical protein NMA0004                                                                                                                                     SCOP domains
               CATH domains -2g03A00 A:12-187 Fic-like domain                                                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..............ee..ee..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhhh...hhhhhhhhhh.ee....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------FIDO  PDB: A:37-162 UniProt: 37-162                                                                                           ------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g03 A  11 mKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAmYLKEALVKIEQmPERTFEEIIAKYVEmNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAmERSPVNDLELRFLLKDNLTDDVDNREIIFKGIEQSYYYEG 187
                            |       20        30        40        50        60        70     |  80       |90       100  |    110       120       130       140      |150       160       170       180       
                            |                                                               76-MSE      88-MSE        103-MSE                                     147-MSE                                    
                           11-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2G03)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (NMFIC_NEIMB | Q7DDR9)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0070733    protein adenylyltransferase activity    Catalysis of the reaction: ATP + protein = diphosphate + adenylyl-protein; mediates the addition of an adenylyl (adenosine 5'-monophosphate; AMP group) to specific residues of target proteins.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0018117    protein adenylylation    The addition of an adenylyl group (adenosine 5'-monophosphate; AMP) to a protein amino acid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NMFIC_NEIMB | Q7DDR9: 3s6a 3se5 3sn9 3zlm 5cgl 5ckl 5cmt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2G03)