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(-) Description

Title :  CRYSTAL STRUCTURE OF RV1848, A UREASE GAMMA SUBUNIT UREA (UREA AMIDOHYDROLASE), FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  E. H. Bursey, M. Yu, Tb Structural Genomics Consortium (Tbsgc), T. B. Rupp, C. Y. Kim, B. S. Rho, T. C. Terwilliger
Date :  30 Jan 06  (Deposition) - 07 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Protein: Urea Homolog, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. H. Bursey, M. Yu, B. W. Segelke, T. Lekin, B. Rupp, C. Y. Kim, B. S. Rho, T. C. Terwilliger, L. -W. Hung
Crystal Structure Of Rv1848, A Urease Gamma Subunit Urea (Urea Amidohydrolase), From Mycobacterium Tuberculosis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UREASE GAMMA SUBUNIT
    Chains: A, B, C
    EC Number: 3.5.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: CUSTOM
    Expression System Strain: BL21/DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: UREA
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H32RV
    Synonym: UREA AMIDOHYDROLASE GAMMA SUBUNIT

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2FVH)

(-) Sites  (0, 0)

(no "Site" information available for 2FVH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FVH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FVH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FVH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FVH)

(-) Exons   (0, 0)

(no "Exon" information available for 2FVH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with URE3_MYCTO | P9WFE6 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           URE3_MYCTO     2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
               SCOP domains d2fvha_ A: automated matches                                                                        SCOP domains
               CATH domains 2fvhA00 A:2-100 Urease, subunit A                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2fvh A   2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
                                    11        21        31        41        51        61        71        81        91         


Chain A from PDB  Type:PROTEIN  Length:99
 aligned with URE3_MYCTU | P9WFE7 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           URE3_MYCTU     2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
               SCOP domains d2fvha_ A: automated matches                                                                        SCOP domains
               CATH domains 2fvhA00 A:2-100 Urease, subunit A                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2fvh A   2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
                                    11        21        31        41        51        61        71        81        91         


Chain B from PDB  Type:PROTEIN  Length:99
 aligned with URE3_MYCTO | P9WFE6 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           URE3_MYCTO     2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
               SCOP domains d2fvhb_ B: automated matches                                                                        SCOP domains
               CATH domains 2fvhB00 B:2-100 Urease, subunit A                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2fvh B   2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
                                    11        21        31        41        51        61        71        81        91         


Chain B from PDB  Type:PROTEIN  Length:99
 aligned with URE3_MYCTU | P9WFE7 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           URE3_MYCTU     2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
               SCOP domains d2fvhb_ B: automated matches                                                                        SCOP domains
               CATH domains 2fvhB00 B:2-100 Urease, subunit A                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2fvh B   2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
                                    11        21        31        41        51        61        71        81        91         


Chain C from PDB  Type:PROTEIN  Length:99
 aligned with URE3_MYCTO | P9WFE6 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           URE3_MYCTO     2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
               SCOP domains d2fvhc_ C: automated matches                                                                        SCOP domains
               CATH domains 2fvhC00 C:2-100 Urease, subunit A                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2fvh C   2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
                                    11        21        31        41        51        61        71        81        91         


Chain C from PDB  Type:PROTEIN  Length:99
 aligned with URE3_MYCTU | P9WFE7 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:99
                                    11        21        31        41        51        61        71        81        91         
           URE3_MYCTU     2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
               SCOP domains d2fvhc_ C: automated matches                                                                        SCOP domains
               CATH domains 2fvhC00 C:2-100 Urease, subunit A                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 2fvh C   2 RLTPHEQERLLLSYAAELARRRRARGLRLNHPEAIAVIADHILEGARDGRTVAELMASGREVLGRDDVMEGVPEMLAEVQVEATFPDGTKLVTVHQPIA 100
                                    11        21        31        41        51        61        71        81        91
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FVH)

(-) Gene Ontology  (6, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (URE3_MYCTU | P9WFE7)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016151    nickel cation binding    Interacting selectively and non-covalently with nickel (Ni) cations.
    GO:0009039    urease activity    Catalysis of the reaction: urea + H2O = CO2 + 2 NH3.
biological process
    GO:0043419    urea catabolic process    The chemical reactions and pathways resulting in the breakdown of urea, the water soluble compound O=C-(NH2)2.
    GO:0019627    urea metabolic process    The chemical reactions and pathways involving urea, the water soluble compound O=C-(NH2)2.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C   (URE3_MYCTO | P9WFE6)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016151    nickel cation binding    Interacting selectively and non-covalently with nickel (Ni) cations.
    GO:0009039    urease activity    Catalysis of the reaction: urea + H2O = CO2 + 2 NH3.
biological process
    GO:0043419    urea catabolic process    The chemical reactions and pathways resulting in the breakdown of urea, the water soluble compound O=C-(NH2)2.
    GO:0019627    urea metabolic process    The chemical reactions and pathways involving urea, the water soluble compound O=C-(NH2)2.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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