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(-) Description

Title :  CRYSTAL STRUCTURE OF A CUPIN DOMAIN (BP2299) FROM BORDETELLA PERTUSSIS TOHAMA I AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  18 Jan 06  (Deposition) - 16 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Double-Stranded Beta-Helix Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of (Np_880937. 1) From Bordetella Pertussi At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN BP2299
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneNP_880937.1
    Organism ScientificBORDETELLA PERTUSSIS TOHAMA I
    Organism Taxid257313
    StrainTOHAMA I

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD
Biological Unit 3 (1x)A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric Unit (4, 19)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2ACT4Ligand/IonACETATE ION
3MSE10Mod. Amino AcidSELENOMETHIONINE
4ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2ACT2Ligand/IonACETATE ION
3MSE5Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2ACT2Ligand/IonACETATE ION
3MSE5Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 8)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2ACT2Ligand/IonACETATE ION
3MSE5Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:33 , HIS A:35 , HIS A:76 , HOH A:164 , HOH A:165 , HOH A:166BINDING SITE FOR RESIDUE ZN A 100
2AC2SOFTWAREHIS B:33 , HIS B:35 , HIS B:76 , HOH B:169 , HOH B:170 , HOH B:171BINDING SITE FOR RESIDUE ZN B 100
3AC3SOFTWAREHIS C:33 , HIS C:35 , HIS C:76 , HOH C:174 , HOH C:175 , HOH C:176BINDING SITE FOR RESIDUE ZN C 100
4AC4SOFTWAREHIS D:33 , HIS D:35 , HIS D:76 , ACT D:101BINDING SITE FOR RESIDUE ZN D 100
5AC5SOFTWARETYR A:39 , TYR A:68 , HIS A:76 , HOH A:119 , HOH A:166BINDING SITE FOR RESIDUE ACT A 101
6AC6SOFTWARETYR B:39 , TYR B:68 , ARG B:70 , HIS B:76 , PHE B:88 , HOH B:170BINDING SITE FOR RESIDUE ACT B 101
7AC7SOFTWARETYR C:39 , TYR C:68 , HIS C:76 , PHE C:88 , HOH C:176BINDING SITE FOR RESIDUE ACT C 101
8AC8SOFTWARETYR D:39 , TYR D:68 , ARG D:70 , HIS D:76 , PHE D:88 , ZN D:100BINDING SITE FOR RESIDUE ACT D 101
9AC9SOFTWARETYR B:68 , THR B:69 , ARG B:70 , HOH B:162 , ASP C:13 , ASN C:14 , HOH C:103 , HOH C:133BINDING SITE FOR RESIDUE 1PE C 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FQP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FQP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FQP)

(-) Exons   (0, 0)

(no "Exon" information available for 2FQP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with Q7VWF8_BORPE | Q7VWF8 from UniProtKB/TrEMBL  Length:96

    Alignment length:96
                             1                                                                                              
                             |       9        19        29        39        49        59        69        79        89      
          Q7VWF8_BORPE    - -MKRPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKA 95
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeee...eeeeeeee........ee....eeeee...eeeeeee..eeeeeee.....eee....eeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2fqp A  0 GmKRPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSmDYVVVPmTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKA 95
                             |       9        19        29       |39    |   49        59        69        79        89      
                             |                                  37-MSE 44-MSE                                               
                             1-MSE                                                                                          

Chain B from PDB  Type:PROTEIN  Length:92
 aligned with Q7VWF8_BORPE | Q7VWF8 from UniProtKB/TrEMBL  Length:96

    Alignment length:92
                                    12        22        32        42        52        62        72        82        92  
          Q7VWF8_BORPE    3 RPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIK 94
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...eeeeeeee........ee....eeeee...eeeeeee..eeeeeee.....eee....eeeee......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  2fqp B  3 RPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSmDYVVVPmTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIK 94
                                    12        22        32    |   42 |      52        62        72        82        92  
                                                             37-MSE 44-MSE                                              

Chain C from PDB  Type:PROTEIN  Length:96
 aligned with Q7VWF8_BORPE | Q7VWF8 from UniProtKB/TrEMBL  Length:96

    Alignment length:96
                             1                                                                                              
                             |       9        19        29        39        49        59        69        79        89      
          Q7VWF8_BORPE    - -MKRPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKA 95
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeee...eeeeeeee........ee....eeeee...eeeeeee..eeeeeee.....eee....eeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2fqp C  0 GmKRPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSmDYVVVPmTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKA 95
                             |       9        19        29       |39    |   49        59        69        79        89      
                             1-MSE                              37-MSE 44-MSE                                               

Chain D from PDB  Type:PROTEIN  Length:94
 aligned with Q7VWF8_BORPE | Q7VWF8 from UniProtKB/TrEMBL  Length:96

    Alignment length:94
                                    12        22        32        42        52        62        72        82        92    
          Q7VWF8_BORPE    3 RPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKAA 96
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...eeeeeeee........ee....eeeee...eeeeeee..eeeeeee.....eee....eeeee......eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  2fqp D  3 RPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSmDYVVVPmTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKAA 96
                                    12        22        32    |   42 |      52        62        72        82        92    
                                                             37-MSE 44-MSE                                                

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2FQP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2FQP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FQP)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q7VWF8_BORPE | Q7VWF8)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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