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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE BACTERIOPHAGE T4 GENE PRODUCT 10
 
Authors :  P. G. Leiman, M. M. Shneider, V. V. Mesyanzhinov, M. G. Rossmann
Date :  04 Jan 06  (Deposition) - 04 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Bacteriophage T4; Baseplate; Tail; Evolution; Gp10; Structural Comparisons, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. G. Leiman, M. M. Shneider, V. V. Mesyanzhinov, M. G. Rossmann
Evolution Of Bacteriophage Tails: Structure Of T4 Gene Product 10
J. Mol. Biol. V. 358 912 2006
PubMed-ID: 16554069  |  Reference-DOI: 10.1016/J.JMB.2006.02.058

(-) Compounds

Molecule 1 - BASEPLATE STRUCTURAL PROTEIN GP10
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21/DE3
    Expression System Taxid: 469008
    Fragment: C-TERMINAL DOMAIN
    Gene: 10
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Strain: D
    Synonym: BASEPLATE WEDGE PROTEIN 10

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
1BR1Ligand/IonBROMIDE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3PO31Ligand/IonPHOSPHITE ION
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3PO33Ligand/IonPHOSPHITE ION
4TRS3Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:588 , HOH A:1049BINDING SITE FOR RESIDUE BR A 701
2AC2SOFTWARETHR A:535 , HOH A:1010 , HOH A:1054BINDING SITE FOR RESIDUE PO3 A 710
3AC3SOFTWAREVAL A:525 , ILE A:586 , THR A:587 , ASN A:588BINDING SITE FOR RESIDUE TRS A 801
4AC4SOFTWAREASP A:419 , ARG A:441 , ASP A:451 , PRO A:455 , ILE A:456 , ARG A:600 , HOH A:1083 , HOH A:1116 , HOH A:1164 , HOH A:1175 , HOH A:1316BINDING SITE FOR RESIDUE EDO A 901
5AC5SOFTWARETYR A:439 , HOH A:1116BINDING SITE FOR RESIDUE EDO A 902
6AC6SOFTWAREALA A:534 , THR A:535 , GLU A:536 , SER A:575 , SER A:578 , HOH A:1100 , HOH A:1133 , HOH A:1261 , HOH A:1304BINDING SITE FOR RESIDUE EDO A 903
7AC7SOFTWARELEU A:501 , PRO A:512 , GLU A:546 , HOH A:1245 , HOH A:1264BINDING SITE FOR RESIDUE EDO A 904

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FKK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Trp A:430 -Pro A:431
2Thr A:581 -Pro A:582

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FKK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FKK)

(-) Exons   (0, 0)

(no "Exon" information available for 2FKK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with BP10_BPT4 | P10928 from UniProtKB/Swiss-Prot  Length:602

    Alignment length:197
                                   415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       
            BP10_BPT4   406 LYVSQGPGVDISGDVNLTDFDKIGWPNVEAVQSYQRAFNAVSNIFDTIYPIGTIYENAVNPNNPVTYMGFGSWKLFGQGKVLVGWNEDISDPNFALNNNDLDSGGNPSHTAGGTGGSTSVTLENANLPATETDEEVLIVDENGSVIVGGCQYDPDESGPIYTKYREAKASTNSTHTPPTSITNIQPYITVYRWIRIA 602
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee...eee..........eee...eee...hhhhhhhhhh....eeee......hhhhhh..eeee.....................eeeee.....ee..........ee..hhhhh....................-------------....................ee........eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fkk A 406 LYVSQGPGVDISGDVNLTDFDKIGWPNVEAVQSYQREFNAVSNIFDTIYPIGTIYENAVNPNNPVTYMGFGSWKLFGQGKVLVGWNEDISDPNFALNNNDLDSGGNPSHTAGGTGGSTSVTLENTNLPATETDEEVLIVDENGSVIV-------------YTKYREAKASTNSTHTPPTSITNIQPYITVYRWIRIA 602
                                   415       425       435       445       455       465       475       485       495       505       515       525       535       545      |  -         -|      575       585       595       
                                                                                                                                                                            552           566
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2FKK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2FKK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FKK)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (BP10_BPT4 | P10928)
biological process
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BP10_BPT4 | P10928: 2fl8 2fl9 5hx2 5iv5 5iv7

(-) Related Entries Specified in the PDB File

2fl8 FITTING OF THE GP10 TRIMER STRUCTURE INTO THE CRYOEM MAP OF THE BACTERIOPHAGE T4 BASEPLATE IN THE HEXAGONAL CONFORMATION.
2fl9 FITTING OF THE GP10 TRIMER STRUCTURE INTO THE CRYOEM MAP OF THE BACTERIOPHAGE T4 BASEPLATE IN THE STAR CONFORMATION.