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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE FDHE PROTEIN FROM PSEUDOMONAS AERUGINOSA
 
Authors :  R. Zhang, E. Evdokimova, A. Savchenko, A. Edwards, A. Joachimiak, Midw Center For Structural Genomics (Mcsg)
Date :  30 Dec 05  (Deposition) - 14 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fdhe Protein, Pseudomonas Aeruginosa, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, E. Evdokimova, A. Savchenko, A. Edwards, A. Joachimiak
The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa Pao1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN FDHE HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1FE5Ligand/IonFE (III) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:185 , CYS A:188 , CYS A:211 , CYS A:214BINDING SITE FOR RESIDUE FE A 401
2AC2SOFTWARECYS B:185 , CYS B:188 , CYS B:211 , CYS B:214BINDING SITE FOR RESIDUE FE B 402
3AC3SOFTWARECYS A:225 , CYS A:228 , CYS A:256 , CYS A:259BINDING SITE FOR RESIDUE FE A 403
4AC4SOFTWARECYS B:225 , CYS B:228 , CYS B:256 , CYS B:259BINDING SITE FOR RESIDUE FE B 404
5AC5SOFTWAREHIS B:20 , HIS B:22 , GLU B:173 , HIS B:219BINDING SITE FOR RESIDUE FE B 405

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:228 -B:259

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:306 -Gly A:307
2Gly A:307 -Gly A:308
3Pro B:306 -Gly B:307
4Gly B:307 -Gly B:308

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FIY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FIY)

(-) Exons   (0, 0)

(no "Exon" information available for 2FIY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
 aligned with FDHE_PSEAE | Q9HV00 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:290
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308
           FDHE_PSEAE    19 PHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
               SCOP domains d2fiya1 A:19-308 FdhE homolog PA4809                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2fiyA00 A:19-308 FdhE-like domain                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.....................eeeeeee.----..eeeeee.....eee................ee....-........eeee......eeeeeee.......hhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fiy A  19 PHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQ----TGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEH-GQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198|    | 208       218       228       238  | |  248       258       268       278       288       298       308
                                                                                                                                                                                                              199  204                                  241 |                                                                 
                                                                                                                                                                                                                                                          243                                                                 


Chain B from PDB  Type:PROTEIN  Length:281
 aligned with FDHE_PSEAE | Q9HV00 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:291
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307 
           FDHE_PSEAE    18 PPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
               SCOP domains d2fiyb_ B: FdhE homolog PA4809                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2fiyB00 B:18-308 FdhE-like domain                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-.......--..........eeeeeee.----..eeeeee.....eee...............eee..---..hhhhh.eeeeee....eeeeeee.......hhhhhhhhhhhhhhhhhhh..ee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fiy B  18 PPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPPALAPLDPERLRKSREHGMPPLAYDLLVREGAWLPWLDALLAGYPAPANAAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGL-EGAVVET--RTLCPACGSPPMAGMIRQ----TGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSL---GQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDGYLRRSPNLLLAPGG 308
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167   | | 177 |  |  187       197 |    |207       217       227       237 |   | 247       257       267       277       287       297       307 
                                                                                                                                                                                   171 |   179  |              199  204                                239 243                                                                 
                                                                                                                                                                                     173      182
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FIY)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FDHE_PSEAE | Q9HV00)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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