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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN NE1496
 
Authors :  V. V. Lunin, T. Skarina, O. Onopriyenko, T. A. Binkowski, A. Joachimiak, A. M. Edwards, A. Savchenko, Midwest Center For Structural Genomics (Mcsg)
Date :  09 Dec 05  (Deposition) - 20 Dec 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc5855, Ne1496, Psi, Protein Structure Initiative, Mcsg, Midwest Center For Structural Genomics, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. V. Lunin, T. Skarina, O. Onopriyenko, T. A. Binkowski, A. Joachimiak, A. M. Edwards, A. Savchenko
The Crystal Structure Of The Hypothetical Protein Ne1496
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN NE1496
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: MODIFIED PET15B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: NITROSOMONAS EUROPAEA
    Organism Taxid: 915

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1NA6Ligand/IonSODIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:129 , PHE A:131 , HOH A:321 , HOH A:334 , HOH A:394 , HOH A:400BINDING SITE FOR RESIDUE NA A 301
2AC2SOFTWAREPRO B:129 , PHE B:131 , HOH B:330 , HOH B:332 , HOH B:398 , HOH B:446BINDING SITE FOR RESIDUE NA B 302
3AC3SOFTWAREGLY B:79 , ALA B:147 , SER B:149 , HOH B:319 , HOH B:323BINDING SITE FOR RESIDUE NA B 303
4AC4SOFTWAREGLY A:79 , ALA A:147 , SER A:149 , HOH A:325 , HOH A:330BINDING SITE FOR RESIDUE NA A 304
5AC5SOFTWAREHIS A:105 , SER A:107 , HOH A:342 , HOH A:421 , HOH A:426BINDING SITE FOR RESIDUE NA A 305
6AC6SOFTWAREHIS B:105 , SER B:107 , HOH B:352 , HOH B:415 , HOH B:444BINDING SITE FOR RESIDUE NA B 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FBL)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:107 -Pro A:108
2Arg B:58 -Gln B:59
3Ser B:107 -Pro B:108

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FBL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FBL)

(-) Exons   (0, 0)

(no "Exon" information available for 2FBL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with 3PASE_NITEU | Q82UI9 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
          3PASE_NITEU     2 TEIERKFLVATFPDGELHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKSEGGLSRQEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDAAQAFIPPPWFGEEVTEDKRYKNKALALSIP 151
               SCOP domains d2fbla1 A:2-151 Hypothetical protein NE1496                                                                                                            SCOP domains
               CATH domains 2fblA00 A:2-151 Hypothetical Protein Pfu-838710-001                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee........eeeeeeeee........eeeeeee..eeeeeee.------..eeeeehhhhhhhhhhhhh..eeeeeeeeee.....eeeeeee.hhhh..eeeeeee.hhhhhhhh.....eeee...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fbl A   2 TEIERKFLVATFPDGELHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKS------QEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDAAQAFIPPPWFGEEVTEDKRYKNKALALSIP 151
                                    11        21        31        41        51|      |61        71        81        91       101       111       121       131       141       151
                                                                             52     59                                                                                            


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with 3PASE_NITEU | Q82UI9 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:150
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
          3PASE_NITEU     2 TEIERKFLVATFPDGELHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKSEGGLSRQEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDAAQAFIPPPWFGEEVTEDKRYKNKALALSIP 151
               SCOP domains d2fblb_ B: Hypothetical protein NE1496                                                                                                                 SCOP domains
               CATH domains 2fblB00 B:2-151 Hypothetical Protein Pfu-838710-001                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee........eeeeeeeee........eeeeeee..eeeeeee....--..eeeeeehhhhhhhhhhhhh..eeeeeeeeee.....eeeeeee.hhhh..eeeeeee...hhhhhh.....eeee...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fbl B   2 TEIERKFLVATFPDGELHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKSEGG--RQEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDAAQAFIPPPWFGEEVTEDKRYKNKALALSIP 151
                                    11        21        31        41        51   |  | 61        71        81        91       101       111       121       131       141       151
                                                                                55 58
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FBL)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (3PASE_NITEU | Q82UI9)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0050355    triphosphatase activity    Catalysis of the reaction: H(2)O + triphosphate = diphosphate + phosphate.

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    Arg B:58 - Gln B:59   [ RasMol ]  
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        3PASE_NITEU | Q82UI9: 3typ

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