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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN MJ1651 FROM METHANOCOCCUS JANNASCHII DSM 2661, PFAM DUF62
 
Authors :  K. N. Rao, S. Swaminathan, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  23 Nov 05  (Deposition) - 06 Dec 05  (Release) - 30 Dec 08  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (2x)
Keywords :  Conserved Hypothetical Protein, Mehtanococcus Jannaschii, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. N. Rao, S. K. Burley, S. Swaminathan
Crystal Structure Of A Conserved Protein Of Unknown Function (Mj1651) From Methanococcus Jannaschii.
Proteins V. 70 572 2008
PubMed-ID: 17910070  |  Reference-DOI: 10.1002/PROT.21646
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN MJ1651
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MJ1651
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2F4N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F4N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F4N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F4N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F4N)

(-) Exons   (0, 0)

(no "Exon" information available for 2F4N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
 aligned with SALL_METJA | Q59045 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:256
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256      
           SALL_METJA     7 DDILDIITLTTDFGTNEGYVGAMKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPYFPPSVHVAVIDPTVGSERKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEERYKPSSTFHGRDVYAVVGAEILINNGYDGEELDEMVKIDETKKRVIHIDRFGNIITNIKKDEVTFKYYDTIMIKIRHKNGIEKIIKCKFVKSYFEEKNNFICLINSEGFLEISKFMDNASKLLNVDYLDEIEII 262
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......hhhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhhhh...eeeee....----..eeeeee....eeeee....hhhhhhhhheeeeee.....--------hhhhhhhhhhhhhhhh...................eeee.....eee...----...---.eeeeee.....eeeeeeee...........eeee.....eeee....hhhhhhh.....eeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f4n A   9 DDILDIITLTTDFGTNEGYVGAmKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPYFPPSVHVAVIDPT----RKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEER--------GRDVYAVVGAEILINNGYDGEELDEmVKIDETKKRVIHIDRFGNIITNIK----TFK---TImIKIRHKNGIEKIIKCKFVKSYFEEKNNFICLINSEGFLEISKFmDNASKLLNVDYLDEIEIE 264
                                    18        28  |     38        48        58        68        78       | -  |     98       108       118       128  |      - |     148       158      |168       178       188|    | | - | |   208       218       228       238       248       258      
                                                 31-MSE                                                 86   91                                     131      140                      165-MSE                 189  194 | 200 |                                         246-MSE              
                                                                                                                                                                                                                     196   202-MSE                                                          


Chain B from PDB  Type:PROTEIN  Length:239
 aligned with SALL_METJA | Q59045 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:254
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258    
           SALL_METJA     9 ILDIITLTTDFGTNEGYVGAMKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPYFPPSVHVAVIDPTVGSERKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEERYKPSSTFHGRDVYAVVGAEILINNGYDGEELDEMVKIDETKKRVIHIDRFGNIITNIKKDEVTFKYYDTIMIKIRHKNGIEKIIKCKFVKSYFEEKNNFICLINSEGFLEISKFMDNASKLLNVDYLDEIEII 262
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee......hhhhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhh...eeeee....----..eeeeee....eeeee....hhhhhhhhheeeeee.....---------hhhhhhhhhhhhhh.....ee.............eeee.....eeeeee.hhh.--...eeeeeee.....eeeeeeee...........eeee....eeeee....hhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f4n B  11 ILDIITLTTDFGTNEGYVGAmKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPYFPPSVHVAVIDPT----RKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEER---------RDVYAVVGAEILINNGYDGEELDEmVKIDETKKRVIHIDRFGNIITNIKKDEVT--YYDTImIKIRHKNGIEKIIKCKFVKSYFEEKNNFICLINSEGFLEISKFmDNASKLLNVDYLDEIEIE 264
                                    20        30|       40        50        60        70        80     |   -|      100       110       120       130|        -|      150       160    |  170       180       190   |  |200 |     210       220       230       240     | 250       260    
                                               31-MSE                                                 86   91                                     131       141                     165-MSE                      194  |    |                                         246-MSE              
                                                                                                                                                                                                                    197    |                                                              
                                                                                                                                                                                                                         202-MSE                                                          


Chain C from PDB  Type:PROTEIN  Length:239
 aligned with SALL_METJA | Q59045 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:254
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258    
           SALL_METJA     9 ILDIITLTTDFGTNEGYVGAMKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPYFPPSVHVAVIDPTVGSERKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEERYKPSSTFHGRDVYAVVGAEILINNGYDGEELDEMVKIDETKKRVIHIDRFGNIITNIKKDEVTFKYYDTIMIKIRHKNGIEKIIKCKFVKSYFEEKNNFICLINSEGFLEISKFMDNASKLLNVDYLDEIEII 262
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee......hhhhhhhhhhhhhhh......eeeeee......hhhhhhhhhhhhhhhh...eeeee....----..eeeeee....eeeee....hhhhhhhhheeeeee.....--------hhhhhhhhhhhhhhhh.....ee............eeee.....eeeeee..---.....eeeeeee.....eeeeeeee..........eeeee....eeeee....hhhhhhh.....eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f4n C  11 ILDIITLTTDFGTNEGYVGAmKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPYFPPSVHVAVIDPT----RKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEER--------GRDVYAVVGAEILINNGYDGEELDEmVKIDETKKRVIHIDRFGNIITNIKKD---FKYYDTImIKIRHKNGIEKIIKCKFVKSYFEEKNNFICLINSEGFLEISKFmDNASKLLNVDYLDEIEIE 264
                                    20        30|       40        50        60        70        80     |   -|      100       110       120       130|      140       150       160    |  170       180       190|   |  200 |     210       220       230       240     | 250       260    
                                               31-MSE                                                 86   91                                     131      140                      165-MSE                   191 195      |                                         246-MSE              
                                                                                                                                                                                                                         202-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2F4N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2F4N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F4N)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (SALL_METJA | Q59045)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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