Chain A from PDB Type:PROTEIN Length:153
aligned with CDTA_AGGAC | O87120 from UniProtKB/Swiss-Prot Length:222
Alignment length:153
79 89 99 109 119 129 139 149 159 169 179 189 199 209 219
CDTA_AGGAC 70 PSEPSNFMTLMGQNGALLTVWALAKRNWLWAYPNIYSQDFGNIRNWKIEPGKHREYFRFVNQSLGTCIEAYGNGLIHDTCSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNPVSPTYYSTVTLSTCDGATEPLRDQTWYLAPPVLEATAVN 222
SCOP domains d2f2fa1 A:71-223 Cytolethal distending toxin subunit A SCOP domains
CATH domains 2f2fA00 A:71-223 [code=2.80.10.50, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhh.eeee...eeeee........eeeee.hhhhhhhhhh.eeeee......eeeee.....eeeee..eeeee.....hhhh.eeeee.....eeeee.....eeee........eeeeee............eeeee.....ee... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------RICIN_B_LECTIN PDB: A:123-212 UniProt: 122-211 ----------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2f2f A 71 PSEPSNFMTLMGQNGALLTVWALAKRNWLWAYPNIYSQDFGNIRNWKIEPGKHREYFRFVNQSLGTCIEAYGNGLIHDTCSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNPVSPTYYSTVTLSTCDGATEPLRDQTWYLAPPVLEATAVN 223
80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
Chain B from PDB Type:PROTEIN Length:261
aligned with Q7DK12_AGGAC | Q7DK12 from UniProtKB/TrEMBL Length:283
Alignment length:261
32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282
Q7DK12_AGGAC 23 NLSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGSDAVSLIRNIFTTFTSSPSSPERRGYSWMVVGDFNRAPVNLEAALRQEPAVSENTIIIAPTEPTHRSGNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVHDR 283
SCOP domains d2f2fb1 B:23-283 Cytolethal distending toxin subunit B SCOP domains
CATH domains 2f2fB00 B:23-283 [code=3.60.10.10, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhh.eeeee.......hhhhhhhhhhhhhh......eeeee.........ee............eeeeee........eeeeeee..........eeeee.....eeeee...........eeeeee..eeeeeee.......hhhhhhhhhhhhhh....hhhhhh.eeeeeee...hhhhhhhhhh.hhhhhhh.eee.............eeeeee.......hhhhh.eeeee.hhhh..........eeeee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2f2f B 23 NLSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGSDAVSLIRNIFTTFTSSPSSPERRGYSWMVVGDFNRAPVNLEAALRQEPAVSENTIIIAPTEPTHRSGNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVHDR 283
32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282
Chain C from PDB Type:PROTEIN Length:154
aligned with Q7DK11_AGGAC | Q7DK11 from UniProtKB/TrEMBL Length:186
Alignment length:154
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174
Q7DK11_AGGAC 25 DPTTYPDVELSPPPRISLRSLLTAQPIKNDHYDSHNYLSTHWELIDYKGKEYEKLRDGGTLVQFKVVGAAKCFAFPGEGTTDCKDIDHTVFNLIPTNTGAFLIKDALLGFCMTSHDFDDLRLEPCGISVSGRTFSLAYQWGILPPFGPSKILRP 178
SCOP domains d2f2fc1 C:25-178 Cytolethal distending toxin subunit C SCOP domains
CATH domains 2f2fC00 C:25-178 [code=2.80.10.50, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..............eeeeee...............hhhhhheeeee.............eeeeee.....eee......eee..hhhhhheeeee.....eeeee.....eee.......eee.........eehhhh.eeee........... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2f2f C 25 DPTTYPDVELSPPPRISLRSLLTAQPIKNDHYDSHNYLSTHWELIDYKGKEYEKLRDGGTLVQFKVVGAAKCFAFPGEGTTDCKDIDHTVFNLIPTNTGAFLIKDALLGFCMTSHDFDDLRLEPCGISVSGRTFSLAYQWGILPPFGPSKILRP 178
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174
Chain D from PDB Type:PROTEIN Length:153
aligned with CDTA_AGGAC | O87120 from UniProtKB/Swiss-Prot Length:222
Alignment length:153
79 89 99 109 119 129 139 149 159 169 179 189 199 209 219
CDTA_AGGAC 70 PSEPSNFMTLMGQNGALLTVWALAKRNWLWAYPNIYSQDFGNIRNWKIEPGKHREYFRFVNQSLGTCIEAYGNGLIHDTCSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNPVSPTYYSTVTLSTCDGATEPLRDQTWYLAPPVLEATAVN 222
SCOP domains d2f2fd_ D: Cytolethal distending toxin subunit A SCOP domains
CATH domains 2f2fD00 D:71-223 [code=2.80.10.50, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhh.eeee...eeeee........eeeee.hhhhhhhhhh.eeeee......eeeee.....eeeee..eeeee.....hhhh.eeeee.....eeeee.....eeee........eeeeee.............eeee.....ee... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------RICIN_B_LECTIN PDB: D:123-212 UniProt: 122-211 ----------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2f2f D 71 PSEPSNFMTLMGQNGALLTVWALAKRNWLWAYPNIYSQDFGNIRNWKIEPGKHREYFRFVNQSLGTCIEAYGNGLIHDTCSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNPVSPTYYSTVTLSTCDGATEPLRDQTWYLAPPVLEATAVN 223
80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
Chain E from PDB Type:PROTEIN Length:261
aligned with Q7DK12_AGGAC | Q7DK12 from UniProtKB/TrEMBL Length:283
Alignment length:261
32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282
Q7DK12_AGGAC 23 NLSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGSDAVSLIRNIFTTFTSSPSSPERRGYSWMVVGDFNRAPVNLEAALRQEPAVSENTIIIAPTEPTHRSGNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVHDR 283
SCOP domains d2f2fe_ E: Cytolethal distending toxin subunit B SCOP domains
CATH domains 2f2fE00 E:23-283 [code=3.60.10.10, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhh.eeeee.......hhhhhhhhhhhhhh......eeeee.........ee............eeeeee........eeeeeee..........eeeee.....eeeee...........eeeeee..eeeeeee.......hhhhhhhhhhhhhh....hhhhhhheeeeeee...hhhhhhhhhh.hhhhhh..eee.............eeeeee.......hhhhh.eeeee.hhhh..........eeeee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2f2f E 23 NLSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGSDAVSLIRNIFTTFTSSPSSPERRGYSWMVVGDFNRAPVNLEAALRQEPAVSENTIIIAPTEPTHRSGNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVHDR 283
32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 222 232 242 252 262 272 282
Chain F from PDB Type:PROTEIN Length:154
aligned with Q7DK11_AGGAC | Q7DK11 from UniProtKB/TrEMBL Length:186
Alignment length:154
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174
Q7DK11_AGGAC 25 DPTTYPDVELSPPPRISLRSLLTAQPIKNDHYDSHNYLSTHWELIDYKGKEYEKLRDGGTLVQFKVVGAAKCFAFPGEGTTDCKDIDHTVFNLIPTNTGAFLIKDALLGFCMTSHDFDDLRLEPCGISVSGRTFSLAYQWGILPPFGPSKILRP 178
SCOP domains d2f2ff_ F: Cytolethal distending toxin subunit C SCOP domains
CATH domains 2f2fF00 F:25-178 [code=2.80.10.50, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..............eeeeee...............hhhhhheeeee.............eeeeee.....ee........ee..hhhhhheeeee.....eeeee.....eee.......eee.........eehhh.eeeee........... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2f2f F 25 DPTTYPDVELSPPPRISLRSLLTAQPIKNDHYDSHNYLSTHWELIDYKGKEYEKLRDGGTLVQFKVVGAAKCFAFPGEGTTDCKDIDHTVFNLIPTNTGAFLIKDALLGFCMTSHDFDDLRLEPCGISVSGRTFSLAYQWGILPPFGPSKILRP 178
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |