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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE DNA DAMAGE-INDUCABLE (DINB) PROTEIN (BH3987) FROM BACILLUS HALODURANS AT 1.42 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Nov 05  (Deposition) - 20 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Putative Dna Damage-Inducable (Dinb) Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Bh3987 From Bacillus Halodurans At 1. 4 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BH3987
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 10176612
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 86665

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE
2NA1Ligand/IonSODIUM ION
3NI2Ligand/IonNICKEL (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:42 , HIS B:114 , HIS B:118 , HOH B:192 , HOH B:195 , HOH B:196BINDING SITE FOR RESIDUE NI B 144
2AC2SOFTWAREHIS A:42 , HIS A:114 , HIS A:118 , HOH A:181 , HOH A:195 , HOH A:220BINDING SITE FOR RESIDUE NI A 144
3AC3SOFTWAREASP A:74 , HOH A:368 , LYS B:24 , HOH B:232 , HOH B:235BINDING SITE FOR RESIDUE NA A 145

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F22)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:61 -Pro A:62
2Phe B:61 -Pro B:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F22)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F22)

(-) Exons   (0, 0)

(no "Exon" information available for 2F22)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
 aligned with Q9RC77_BACHO | Q9RC77 from UniProtKB/TrEMBL  Length:143

    Alignment length:142
                             1                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139  
         Q9RC77_BACHO     - -MDTNGVLYAANMTNALAKEIPESKWDIQLIPELGTLRKLFIHIVRVRDVYRDGLKTGSIKFPGRLASDEHRLLDELERSMEELVFEFKQTTFNSIKMGENYLSIMELLGTVIQHEGIHQGQYYVALKQSGINLPKQWVQDW 141
               SCOP domains -d2f22a1 A:1-141 Hypothetical protein BH3987                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhee...........hhhhhhhhhhhhhhhhhhhh...eeee..eeeehhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f22 A   0 GmDTNGVLYAANmTNALAKEIPESKWDIQLIPELGTLRKLFIHIVRVRDVYRDGLKTGSIKFPGRLASDEHRLLDELERSmEELVFEFKQTTFNSIKmGENYLSImELLGTVIQHEGIHQGQYYVALKQSGINLPKQWVQDW 141
                             |       9  |     19        29        39        49        59        69        79|       89       |99     | 109       119       129       139  
                             |         12-MSE                                                              80-MSE           97-MSE 105-MSE                                
                             1-MSE                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:143
 aligned with Q9RC77_BACHO | Q9RC77 from UniProtKB/TrEMBL  Length:143

    Alignment length:143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140   
         Q9RC77_BACHO     1 MDTNGVLYAANMTNALAKEIPESKWDIQLIPELGTLRKLFIHIVRVRDVYRDGLKTGSIKFPGRLASDEHRLLDELERSMEELVFEFKQTTFNSIKMGENYLSIMELLGTVIQHEGIHQGQYYVALKQSGINLPKQWVQDWHM 143
               SCOP domains d2f22b_ B: Hypothetical protein BH3987                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhee...........hhhhhhhhhhhhhhhhhhhh...eeee..eeeehhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f22 B   1 mDTNGVLYAANmTNALAKEIPESKWDIQLIPELGTLRKLFIHIVRVRDVYRDGLKTGSIKFPGRLASDEHRLLDELERSmEELVFEFKQTTFNSIKmGENYLSImELLGTVIQHEGIHQGQYYVALKQSGINLPKQWVQDWHm 143
                            |       10 |      20        30        40        50        60        70        80        90      |100    |  110       120       130       140  |
                            1-MSE     12-MSE                                                              80-MSE           97-MSE 105-MSE                               143-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2F22)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F22)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2F22)

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