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(-) Description

Title :  STRUCTURE OF THE FAMILY43 BETA-XYLOSIDASE FROM GEOBACILLUS STEAROTHERMOPHILUS
 
Authors :  C. Brux, K. Niefind, D. Shallom-Shezifi, S. Yuval, D. Schomburg
Date :  08 Nov 05  (Deposition) - 04 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Glykosidase, Hydrolsase, Xylosidase, Family43, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Brux, A. Ben-David, D. Shallom-Shezifi, M. Leon, K. Niefind, G. Shoham, Y. Shoham, D. Schomburg
The Structure Of An Inverting Gh43 Beta-Xylosidase From Geobacillus Stearothermophilus With Its Substrate Reveals The Role Of The Three Catalytic Residues.
J. Mol. Biol. V. 359 97 2006
PubMed-ID: 16631196  |  Reference-DOI: 10.1016/J.JMB.2006.03.005
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BETA-D-XYLOSIDASE
    Chains: A, B, C, D
    EC Number: 3.2.1.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET9D
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2GOL4Ligand/IonGLYCEROL
3MES3Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL4Ligand/IonGLYCEROL
3MES3Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
3MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:333 , GLY A:362 , ASP A:528 , HOH A:2125 , HOH A:2139BINDING SITE FOR RESIDUE CA A 2001
02AC2SOFTWAREASP B:333 , GLY B:362 , ASP B:528 , HOH B:2113 , HOH B:2162 , HOH B:2308BINDING SITE FOR RESIDUE CA B 2002
03AC3SOFTWAREASP C:333 , GLY C:362 , ASP C:528 , HOH C:2101 , HOH C:2113BINDING SITE FOR RESIDUE CA C 2003
04AC4SOFTWAREASP D:333 , GLY D:362 , ASP D:528 , HOH D:2138BINDING SITE FOR RESIDUE CA D 2004
05AC5SOFTWAREVAL A:52 , ALA A:53 , ARG A:54 , HIS A:341 , HOH A:2316 , HIS B:389 , GLN B:468 , LEU B:535BINDING SITE FOR RESIDUE MES A 2005
06AC6SOFTWARELEU B:51 , VAL B:52 , ARG B:54 , ASN B:57 , ASP B:113 , GLY B:114 , HIS B:341BINDING SITE FOR RESIDUE MES B 2006
07AC7SOFTWARELEU D:51 , VAL D:52 , ALA D:53 , ARG D:54 , ASN D:57 , ASP D:113 , HIS D:341BINDING SITE FOR RESIDUE MES D 2007
08AC8SOFTWARESER A:60 , GLN A:61 , ASN A:63 , ASP A:91 , TYR A:105 , PRO A:119 , HOH A:2134 , HOH A:2425BINDING SITE FOR RESIDUE GOL A 2008
09AC9SOFTWARESER B:60 , GLN B:61 , LEU B:62 , ASN B:63 , ASP B:91 , TYR B:105 , PRO B:119 , HOH B:2124 , HOH B:2467BINDING SITE FOR RESIDUE GOL B 2009
10BC1SOFTWARESER C:60 , LEU C:62 , ASN C:63 , ASP C:91 , TYR C:105 , PRO C:119 , HOH C:2307BINDING SITE FOR RESIDUE GOL C 2010
11BC2SOFTWARESER D:60 , GLN D:61 , LEU D:62 , ASN D:63 , ASP D:91 , TYR D:105 , PRO D:119 , HOH D:2033BINDING SITE FOR RESIDUE GOL D 2011

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EXH)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Asn A:6 -Pro A:7
2Phe A:35 -Pro A:36
3Gly A:223 -Pro A:224
4Asn A:231 -Pro A:232
5Asn B:6 -Pro B:7
6Phe B:35 -Pro B:36
7Gly B:223 -Pro B:224
8Asn B:231 -Pro B:232
9Asn C:6 -Pro C:7
10Phe C:35 -Pro C:36
11Gly C:223 -Pro C:224
12Asn C:231 -Pro C:232
13Asn D:6 -Pro D:7
14Phe D:35 -Pro D:36
15Gly D:223 -Pro D:224
16Asn D:231 -Pro D:232

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EXH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EXH)

(-) Exons   (0, 0)

(no "Exon" information available for 2EXH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:533
 aligned with Q09LX0_GEOSE | Q09LX0 from UniProtKB/TrEMBL  Length:535

    Alignment length:533
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532   
         Q09LX0_GEOSE     3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
               SCOP domains d2exha2 A:3-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                               d2exha1 A:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 2exhA01 A:3-327 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 2exhA02 A:328-535  [code=2.60.120.200, no name defined]                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........eeeee..eeeeee....ee...eeeee......eeee.......................eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee....................eeeeeeeeee....eee........ee................ee............ee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee.....eee....ee.hhhhhhhh.........eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2exh A   3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532   


Chain B from PDB  Type:PROTEIN  Length:533
 aligned with Q09LX0_GEOSE | Q09LX0 from UniProtKB/TrEMBL  Length:535

    Alignment length:533
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532   
         Q09LX0_GEOSE     3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
               SCOP domains d2exhb2 B:3-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                               d2exhb1 B:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 2exhB01 B:3-327 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 2exhB02 B:328-535  [code=2.60.120.200, no name defined]                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........eeeee..eeeeee....ee...eeeee......eeee.......................eeeee..eeeeeeeee.........eeeeeeee..........ee........eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee.....................eeeeeeeeee..eeee........ee................ee............ee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......ee....ee.hhhhhhhh.........eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2exh B   3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532   


Chain C from PDB  Type:PROTEIN  Length:533
 aligned with Q09LX0_GEOSE | Q09LX0 from UniProtKB/TrEMBL  Length:535

    Alignment length:533
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532   
         Q09LX0_GEOSE     3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
               SCOP domains d2exhc2 C:3-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                               d2exhc1 C:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 2exhC01 C:3-327 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 2exhC02 C:328-535  [code=2.60.120.200, no name defined]                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........eeeee..eeeeee....ee...eeeee......eeee.......................eeeee..eeeeeeeee.........eeeeeeee..........eeee......eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee....................eeeeeeeeeee..eeee........ee................ee............ee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......ee....ee....hhhhh.........eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2exh C   3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532   


Chain D from PDB  Type:PROTEIN  Length:533
 aligned with Q09LX0_GEOSE | Q09LX0 from UniProtKB/TrEMBL  Length:535

    Alignment length:533
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532   
         Q09LX0_GEOSE     3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
               SCOP domains d2exhd2 D:3-324 Beta-D-xylosidase N-terminal domain                                                                                                                                                                                                                                                                               d2exhd1 D:325-535 Beta-D-xylosidase C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 2exhD01 D:3-327 Glycosyl hydrolase domain; family 43                                                                                                                                                                                                                                                                                 2exhD02 D:328-535  [code=2.60.120.200, no name defined]                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...........eeeee..eeeeee....ee...eeeee......eeee.......................eeeee..eeeeeeeee.........eeeeeeee..........eeee......eeee.....eeeeeeee........eeeeeeeeee....eeeeeeeeee........eeeeeeee..eeeeeeee.......eeeeeee.......ee......ee.........eeeeeeeeee.....eeeeeeee....................eeeeeeeeeee..eeee........ee................ee............ee........ee.......eeee...........eeeeee....eeeeeeeee.......eeeeeeeeee..eeeeeeeeee...eeeeeeeeee..eee.......ee.......eeeeeeee..eeeeeee......ee....ee.hhhhhhhh.........eeeeeeee......eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2exh D   3 KIKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLEHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPSVEEVSWEKDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFVAETKVSFRPTTFQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYLRVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL 535
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EXH)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q09LX0_GEOSE | Q09LX0)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

 Visualization

(-) Interactive Views

Asymmetric Unit
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q09LX0_GEOSE | Q09LX0: 2exi 2exj 2exk

(-) Related Entries Specified in the PDB File

2exi 2exj 2exk