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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE NUCLEOTIDYLTRANSFERASE (TM1012) FROM THERMOTOGA MARITIMA AT 1.60 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  05 Nov 05  (Deposition) - 06 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Putative Nucleotidyltransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm1012) From Thermotoga Maritima At 1. 60 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM1012
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1012
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:71 , SER A:72 , THR A:73 , SER A:78 , HOH A:350BINDING SITE FOR RESIDUE EDO A 159
2AC2SOFTWAREGLN A:47 , ILE A:96 , LYS A:98 , GLU A:106 , TYR A:132 , ALA A:136 , HOH A:182 , HOH A:204BINDING SITE FOR RESIDUE EDO A 160
3AC3SOFTWAREILE A:76 , ARG A:142 , HOH A:204 , HOH A:218 , HOH A:325 , HOH A:358BINDING SITE FOR RESIDUE EDO A 161
4AC4SOFTWARELYS A:18 , LYS A:124 , VAL A:143 , EDO A:163 , HOH A:224 , HOH A:228BINDING SITE FOR RESIDUE EDO A 162
5AC5SOFTWARETRP A:24 , LYS A:115 , EDO A:162 , HOH A:225 , HOH A:367BINDING SITE FOR RESIDUE EDO A 163

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EWR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EWR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EWR)

(-) Exons   (0, 0)

(no "Exon" information available for 2EWR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with Q9X0A5_THEMA | Q9X0A5 from UniProtKB/TrEMBL  Length:158

    Alignment length:156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      
         Q9X0A5_THEMA     2 IRPEYLRVLRKIYDRLKNEKVNWVVTGSLSFALQGVPVEVHDIDIQTDEEGAYEIERIFSEFVSKKVRFSSTEKICSHFGELIIDGIKVEIMGDIRKRLEDGTWEDPVDLNKYKRFVETHGMKIPVLSLEYEYQAYLKLGRVEKAETLRKWLNERK 157
               SCOP domains d2ewra1 A:2-157 Hypothetical protein TM1012                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.....eeeehhhhhhhh........eeeeehhhhhhhhhhhh...eeeeeeeee...eeeeeeeeee..eeeeeeeeeee...........hhhhheeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ewr A   2 IRPEYLRVLRKIYDRLKNEKVNWVVTGSLSFALQGVPVEVHDIDIQTDEEGAYEIERIFSEFVSKKVRFSSTEKICSHFGELIIDGIKVEImGDIRKRLEDGTWEDPVDLNKYKRFVETHGmKIPVLSLEYEYQAYLKLGRVEKAETLRKWLNERK 157
                                    11        21        31        41        51        61        71        81        91 |     101       111       121 |     131       141       151      
                                                                                                                      93-MSE                       123-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EWR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EWR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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