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(-) Description

Title :  CRYSTAL STRUCTURE OF YFMB FROM BACILLUS SUBTILIS. NESG TARGET SR324
 
Authors :  J. Benach, M. Abashidze, S. Jayaraman, H. Janjua, B. Cooper, X. Rong, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  28 Oct 05  (Deposition) - 08 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Benach, M. Abashidze, S. Jayaraman, X. Rong, T. B. Acton, G. T. Montelione, L. Tong
Crystal Structure Of Yfmb From Bacillus Subtilis Nesg Target Sr324.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YFMB
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YFMB
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2EUC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EUC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EUC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EUC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EUC)

(-) Exons   (0, 0)

(no "Exon" information available for 2EUC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with YFMB_BACSU | O34626 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
           YFMB_BACSU     1 MQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHFHIDIDFVFSIIMNIGDIEFALTDEIEKKLSGYLSTLLPYVTADMFETSKANAHAFLSRRHGNAAYHLFV 113
               SCOP domains d2euca1 A:1-113 Hypothetical protein YfmB                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-----....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2euc A   1 mQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHFHIDIDFVFSIImNIGDIEFALTDEIEKKLSGYLSTLLPYVTADmFETSKANAHAFLS-----AAYHLFV 113
                            |       10        20        30        40        50     |  60        70        80       |90       100|     |110   
                            |                                                     56-MSE                          88-MSE      101   107      
                            1-MSE                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:108
 aligned with YFMB_BACSU | O34626 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:113
                                    10        20        30        40        50        60        70        80        90       100       110   
           YFMB_BACSU     1 MQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHFHIDIDFVFSIIMNIGDIEFALTDEIEKKLSGYLSTLLPYVTADMFETSKANAHAFLSRRHGNAAYHLFV 113
               SCOP domains d2eucb_ B: Hypothetical protein YfmB                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-----....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2euc B   1 mQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHFHIDIDFVFSIImNIGDIEFALTDEIEKKLSGYLSTLLPYVTADmFETSKANAHAFLS-----AAYHLFV 113
                            |       10        20        30        40        50     |  60        70        80       |90       100|     |110   
                            1-MSE                                                 56-MSE                          88-MSE      101   107
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EUC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EUC)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2EUC)

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