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Title :   CRYSTAL STRUCTURE OF A PUTATIVE FE(III) ABC TRANSPORTER (TM0189) FROM THERMOTOGA MARITIMA MSB8 AT 1.70 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   27 Oct 05 (Deposition) - 07 Feb 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A  (3x)

Keywords :   Periplasmic Iron-Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Iron(Iii) Abc Transporter, Periplasmic Iron-Binding Protein, Putative (Tm0189) From Thermotoga Maritima At 1. 70 A Resolution
To Be Published
PubMed: search

Molecule 1 - IRON(III) ABC TRANSPORTER, PERIPLASMIC IRON-BINDING PROTEIN, PUTATIVE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TM0189
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	243274
	Strain	:	MSB8

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (3x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 69)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	EDO	19	Ligand/Ion	1,2-ETHANEDIOL
3	MLY	42	Mod. Amino Acid	N-DIMETHYL-LYSINE
4	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
5	NI	1	Ligand/Ion	NICKEL (II) ION
6	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (4, 33)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
3	MLY	21	Mod. Amino Acid	N-DIMETHYL-LYSINE
4	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
5	NI	-1	Ligand/Ion	NICKEL (II) ION
6	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (3, 33)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	10	Ligand/Ion	1,2-ETHANEDIOL
3	MLY	21	Mod. Amino Acid	N-DIMETHYL-LYSINE
4	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
5	NI	-1	Ligand/Ion	NICKEL (II) ION
6	PO4	-1	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (4, 99)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	27	Ligand/Ion	1,2-ETHANEDIOL
3	MLY	63	Mod. Amino Acid	N-DIMETHYL-LYSINE
4	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
5	NI	-1	Ligand/Ion	NICKEL (II) ION
6	PO4	3	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:-4 , HIS A:-2 , HIS A:-1 , HIS A:-3 , HOH A:495 , HOH A:496	BINDING SITE FOR RESIDUE NI A 1
02	AC2	SOFTWARE	TYR A:54 , GLY A:293 , HOH A:772	BINDING SITE FOR RESIDUE CL A 2
03	AC3	SOFTWARE	TYR B:54 , GLY B:293	BINDING SITE FOR RESIDUE CL B 3
04	AC4	SOFTWARE	HIS A:-4 , HOH A:390 , HOH A:497 , HOH A:756	BINDING SITE FOR RESIDUE PO4 A 4
05	AC5	SOFTWARE	ARG A:183 , GLU A:309 , ARG A:310 , PHE A:311 , THR A:312 , ASP A:313 , GLU B:309 , ARG B:310 , PHE B:311 , THR B:312 , ASP B:313	BINDING SITE FOR RESIDUE EDO A 5
06	AC6	SOFTWARE	PRO B:95 , TYR B:287 , TYR B:288 , HOH B:594 , HOH B:635	BINDING SITE FOR RESIDUE EDO B 6
07	AC7	SOFTWARE	VAL A:241 , TRP A:242 , HOH A:627 , ARG B:40 , GLN B:108	BINDING SITE FOR RESIDUE EDO B 7
08	AC8	SOFTWARE	ILE B:205 , PRO B:236 , ASP B:260 , HIS B:264 , PHE B:267 , HOH B:559	BINDING SITE FOR RESIDUE EDO B 8
09	AC9	SOFTWARE	SER B:89 , THR B:106 , LEU B:107	BINDING SITE FOR RESIDUE EDO B 9
10	BC1	SOFTWARE	GLY B:45 , GLU B:65 , GLY B:94 , MLY B:97 , TYR B:288 , HOH B:452 , HOH B:498	BINDING SITE FOR RESIDUE EDO B 10
11	BC2	SOFTWARE	SER A:36 , ASN A:37 , VAL A:38 , ILE A:159 , GLY A:161 , HOH A:676	BINDING SITE FOR RESIDUE EDO A 11
12	BC3	SOFTWARE	ALA A:80 , TYR A:81 , GLU A:83 , LEU A:328 , GLY A:329 , MLY A:330 , HOH A:565 , HOH A:646	BINDING SITE FOR RESIDUE EDO A 12
13	BC4	SOFTWARE	PRO A:236 , ASP A:260	BINDING SITE FOR RESIDUE EDO A 13
14	BC5	SOFTWARE	MLY A:345 , THR A:357 , HOH A:454 , PHE B:233	BINDING SITE FOR RESIDUE EDO A 14
15	BC6	SOFTWARE	LEU B:258 , TYR B:261 , LEU B:348 , PRO B:349 , GLY B:351	BINDING SITE FOR RESIDUE EDO B 15
16	BC7	SOFTWARE	HIS A:203 , GLY A:204 , ASP A:206 , ARG B:352	BINDING SITE FOR RESIDUE EDO A 16
17	BC8	SOFTWARE	ARG A:30 , GLU A:31 , ARG A:119 , GLU A:163 , GLU A:164 , HOH A:508	BINDING SITE FOR RESIDUE EDO A 17
18	BC9	SOFTWARE	EDO B:20 , SER B:36	BINDING SITE FOR RESIDUE EDO B 18
19	CC1	SOFTWARE	PRO A:95 , ASN A:286 , TYR A:287 , TYR A:288 , HOH A:478 , HOH A:620 , HOH A:645	BINDING SITE FOR RESIDUE EDO A 19
20	CC2	SOFTWARE	EDO B:18 , GLU B:33 , HOH B:396 , HOH B:584	BINDING SITE FOR RESIDUE EDO B 20
21	CC3	SOFTWARE	PRO A:46 , HOH A:620 , HOH A:759	BINDING SITE FOR RESIDUE EDO A 21
22	CC4	SOFTWARE	MLY B:56 , ALA B:57 , THR B:58 , ASP B:59 , MSE B:60 , ARG B:162 , HOH B:373 , HOH B:698	BINDING SITE FOR RESIDUE EDO B 22
23	CC5	SOFTWARE	TYR B:81 , PRO B:82 , GLU B:83 , HOH B:514 , HOH B:605	BINDING SITE FOR RESIDUE EDO B 23

(no "SS Bond" information available for 2ETV)

(no "Cis Peptide Bond" information available for 2ETV)

(no "SAP(SNP)/Variant" information available for 2ETV)

(no "PROSITE Motif" information available for 2ETV)

(no "Exon" information available for 2ETV)

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:341
 aligned with Q9WY32_THEMA | Q9WY32 from UniProtKB/TrEMBL  Length:358

    Alignment length:341
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357 
         Q9WY32_THEMA    18 FSEGIVIKDLLGREVEIPSNVNRIVAVGPGALRLIAYLKATDMVVGVEDFEKLRPYGRPYILAYPELKKLPSVGPGGPGKLPDLESLITLQPDVVFITYVDRKTAKDIQEKTGIPVVVLSYGNLGTFEDEDLFRSIELAGKILGREERAHEVVDFIRKAQEDLVTRSEGVESPTVYVGGIGYKGAHGIDSTEAKYPPFVVLHARNVVDELGEGHKFIDPEKLLVWNPEYIFIDENGLSLVLDDYSKHREFYESLSAVKRGKVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDIDPEEKADEIYEFLLGKRVYGEMAEQFGGFGKIDLPSGRILRGTW 358
               SCOP domains -------d2etva1 A:25-358 Putative iron(III) transporter TM0189                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....eeeee.....eeee..hhhhhhhhh.hhhhh....hhhhhh...hhhhhhhhhhhhh............hhhhhhhhh..eeeee..hhhhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...........eeee.hhhhhhh..ee.hhhhh.eeee..hhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeee........hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhh..eee......eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2etv A  -6 IHHHHHHkDLLGREVEIPSNVNRIVAVGPGALRLIAYLkATDmVVGVEDFEkLRPYGRPYILAYPELkkLPSVGPGGPGkLPDLESLITLQPDVVFITYVDRkTAkDIQEkTGIPVVVLSYGNLGTFEDEDLFRSIELAGkILGREERAHEVVDFIRkAQEDLVTRSEGVESPTVYVGGIGYkGAHGIDSTEAkYPPFVVLHARNVVDELGEGHkFIDPEkLLVWNPEYIFIDENGLSLVLDDYSkHREFYESLSAVkRGkVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDIDPEEkADEIYEFLLGkRVYGEmAEQFGGFGkIDLPSGRILRGTW 358
                                  ||27        37        47        57  |     67 |      77       |87        97       107       117  |  | 127|      137       147       157|      167       177       187       197  |    207   |   217       227    |  237|      247       257     | 267       277|      287       297       307       317 |     327  |    337       347       357 
                                  0|                             56-MLY       69-MLY          85-MLY      97-MLY                120-MLY   |                           158-MLY          175-MLY                  200-MLY    211-MLY              232-MLY |                      263-MLY     275-MLY                                     319-MLY    330-MLY |      345-MLY         
                                  25-MLY                             60-MSE                    86-MLY                              123-MLY|                                                                                                           238-MLY                                 278-MLY                                                   336-MSE                  
                                                                                                                                        128-MLY

Chain B from PDB  Type:PROTEIN  Length:336
 aligned with Q9WY32_THEMA | Q9WY32 from UniProtKB/TrEMBL  Length:358

    Alignment length:336
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352      
         Q9WY32_THEMA    23 VIKDLLGREVEIPSNVNRIVAVGPGALRLIAYLKATDMVVGVEDFEKLRPYGRPYILAYPELKKLPSVGPGGPGKLPDLESLITLQPDVVFITYVDRKTAKDIQEKTGIPVVVLSYGNLGTFEDEDLFRSIELAGKILGREERAHEVVDFIRKAQEDLVTRSEGVESPTVYVGGIGYKGAHGIDSTEAKYPPFVVLHARNVVDELGEGHKFIDPEKLLVWNPEYIFIDENGLSLVLDDYSKHREFYESLSAVKRGKVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDIDPEEKADEIYEFLLGKRVYGEMAEQFGGFGKIDLPSGRILRGTW 358
               SCOP domains d2etvb_ B: Putative iron(III) transporter TM0189                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.....ee........eeee..hhhhhhhhh.hhhhh....hhhhhh...hhhhhhhhhhhhh............hhhhhhhhh..eeee...hhhhhhhhhhhhh..eee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...........eeee.hhhhhhh..ee.hhhhh.eeee.hhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeee........hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhh..eeee....eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2etv B  -1 HHkDLLGREVEIPSNVNRIVAVGPGALRLIAYLkATDmVVGVEDFEkLRPYGRPYILAYPELkkLPSVGPGGPGkLPDLESLITLQPDVVFITYVDRkTAkDIQEkTGIPVVVLSYGNLGTFEDEDLFRSIELAGkILGREERAHEVVDFIRkAQEDLVTRSEGVESPTVYVGGIGYkGAHGIDSTEAkYPPFVVLHARNVVDELGEGHkFIDPEkLLVWNPEYIFIDENGLSLVLDDYSkHREFYESLSAVkRGkVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDIDPEEkADEIYEFLLGkRVYGEmAEQFGGFGkIDLPSGRILRGTW 358
                             ||     32        42        52   |   |62      | 72        82  ||    92    |  102       112       122|    | 132       142       152     | 162       172  |    182       192       202       212       222       232     | 242       252       262|      272  |  | 282       292       302       312      |322       332   |   342  |    352      
                             0|                             56-MLY       69-MLY          85-MLY      97-MLY                120-MLY   |                           158-MLY          175-MLY                  200-MLY    211-MLY              232-MLY |                      263-MLY     275-MLY                                     319-MLY    330-MLY |      345-MLY         
                             25-MLY                             60-MSE                    86-MLY                              123-MLY|                                                                                                           238-MLY                                 278-MLY                                                   336-MSE                  
                                                                                                                                   128-MLY

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Asymmetric Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Chelatase-like (149)

Superfamily: Helical backbone metal receptor (102)

Family: TM0189-like (10)

Protein domain: Putative iron(III) transporter TM0189 (1)

Thermotoga maritima [TaxId: 2336] (1)

1a	d2etva1	A:25-358
1b	d2etvb_	B:

(no "CATH Domain" information available for 2ETV)

(no "Pfam Domain" information available for 2ETV)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q9WY32_THEMA | Q9WY32)

molecular function
	GO:0036094	small molecule binding	Interacting selectively and non-covalently with a small molecule, any low molecular weight, monomeric, non-encoded molecule.
biological process
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.

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