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(-) Description

Title :  CRYSTAL STRUCTURE OF Q8ZP25 FROM SALMONELLA TYPHIMURIUM LT2. NESG TARGET STR70
 
Authors :  J. Benach, M. Su, F. Forouhar, Y. Chen, C. K. Ho, H. Janjua, K. Cunningham X. Rong, J. Liu, M. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  25 Oct 05  (Deposition) - 01 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Benach, M. Su, F. Forouhar, Y. Chen, H. Janjua, B. X. Rong, T. B. Acton G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Q8Zp25 From Salmonella Typhimurium Lt2 Nesg Target Str70.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE THIOL-DISULFIDE ISOMERASE AND THIOREDOXIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: STM1790
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2
    Synonym: Q8ZP25_SALTY

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2ES7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ES7)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Phe A:92 -Pro A:93
2Phe B:92 -Pro B:93
3Phe C:92 -Pro C:93
4Phe D:92 -Pro D:93

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ES7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ES7)

(-) Exons   (0, 0)

(no "Exon" information available for 2ES7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with Q8ZP25_SALTY | Q8ZP25 from UniProtKB/TrEMBL  Length:134

    Alignment length:119
                                    16        26        36        46        56        66        76        86        96       106       116         
         Q8ZP25_SALTY     7 FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125
               SCOP domains d2es7a1 A:7-125 Hyd        rogenase-1 ope    ron protein HyaE                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...ee....--------...eeeee......----.hhhhhhhhhhhh......eeeeehhhhhhhhhhh.......eeeee...----.ee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2es7 A   7 FSALWQRLLTRGWQPVEAS--------VGDGVILLSSDPRR----SDNPVmIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDG----ALSGIHPWAELLTLmRSIVD 125
                                    16        |-       |36        46|    |  56|       66        76        86        96    |  106       116   |     
                                             25       34           47   52    |                                         101  106           120-MSE 
                                                                             57-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:103
 aligned with Q8ZP25_SALTY | Q8ZP25 from UniProtKB/TrEMBL  Length:134

    Alignment length:119
                                    16        26        36        46        56        66        76        86        96       106       116         
         Q8ZP25_SALTY     7 FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125
               SCOP domains d2es7b_ B: Hydrogen        ase-1 operon p    rotein HyaE                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...ee....--------..eeeeee......----.hhhhhhhhhhhh......eeeeehhhhhhhhhhh.......eeeeee..----.ee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2es7 B   7 FSALWQRLLTRGWQPVEAS--------VGDGVILLSSDPRR----SDNPVmIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDG----ALSGIHPWAELLTLmRSIVD 125
                                    16        |-       |36        46|    |  56|       66        76        86        96    |  106       116   |     
                                             25       34           47   52    |                                         101  106           120-MSE 
                                                                             57-MSE                                                                


Chain C from PDB  Type:PROTEIN  Length:103
 aligned with Q8ZP25_SALTY | Q8ZP25 from UniProtKB/TrEMBL  Length:134

    Alignment length:119
                                    16        26        36        46        56        66        76        86        96       106       116         
         Q8ZP25_SALTY     7 FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125
               SCOP domains d2es7c_ C: Hydrogen        ase-1 operon p    rotein HyaE                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...ee....--------..eeeeee......----.hhhhhhhhhhhh......eeeeehhhhhhhhhhh.......eeeeee..----.ee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2es7 C   7 FSALWQRLLTRGWQPVEAS--------VGDGVILLSSDPRR----SDNPVmIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDG----ALSGIHPWAELLTLmRSIVD 125
                                    16        |-       |36        46|    |  56|       66        76        86        96    |  106       116   |     
                                             25       34           47   52    |                                         101  106           120-MSE 
                                                                             57-MSE                                                                


Chain D from PDB  Type:PROTEIN  Length:103
 aligned with Q8ZP25_SALTY | Q8ZP25 from UniProtKB/TrEMBL  Length:134

    Alignment length:119
                                    16        26        36        46        56        66        76        86        96       106       116         
         Q8ZP25_SALTY     7 FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125
               SCOP domains d2es7d_ D: Hydrogen        ase-1 operon p    rotein HyaE                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...ee....--------..eeeeee......----.hhhhhhhhhhhh......eeeeehhhhhhhhhhh.......eeeeee..----.ee...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2es7 D   7 FSALWQRLLTRGWQPVEAS--------VGDGVILLSSDPRR----SDNPVmIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDG----ALSGIHPWAELLTLmRSIVD 125
                                    16        |-       |36        46|    |  56|       66        76        86        96    |  106       116   |     
                                             25       34           47   52    |                                         101  106           120-MSE 
                                                                             57-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ES7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ES7)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8ZP25_SALTY | Q8ZP25)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.

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  Q8ZP25_SALTY | Q8ZP25
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8ZP25_SALTY | Q8ZP25: 2gzp 2jzt

(-) Related Entries Specified in the PDB File

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