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(-) Description

Title :  CRYSTAL STRUCTURE OF GK2038 PROTEIN (ENOYL-COA HYDRATASE SUBUNIT II) FROM GEOBACILLUS KAUSTOPHILUS
 
Authors :  N. Okazaki, Y. Agari, A. Ebihara, L. Chen, Z. Q. Fu, J. Chrzas, B. C. Wang, S. Kuramitsu, M. Yamamoto, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  15 Mar 07  (Deposition) - 18 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Keywords :  Structural Genomics, Gk2038, Enoyl-Coa Hydratase Subunit Ii, Geobacillus Kaustophilus, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Okazaki, Y. Agari, A. Ebihara, L. Chen, Z. Q. Fu, J. Chrzas, B. C. Wang S. Kuramitsu, M. Yamamoto, S. Yokoyama
Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENOYL-COA HYDRATASE SUBUNIT II
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: BL21(DE3)-RIL-X
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GK2038
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS
    Organism Taxid: 1462
    Synonym: PHENYLACETIC ACID CATABOLISM, GK2038 PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): A 
Biological Unit 2 (3x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2EJ5)

(-) Sites  (0, 0)

(no "Site" information available for 2EJ5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EJ5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EJ5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EJ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EJ5)

(-) Exons   (0, 0)

(no "Exon" information available for 2EJ5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
 aligned with Q5KYB3_GEOKA | Q5KYB3 from UniProtKB/TrEMBL  Length:257

    Alignment length:257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       
         Q5KYB3_GEOKA     1 MYETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQGN 257
               SCOP domains d2ej5a_ A: automated matches                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2ej5A01 A:3-201 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                               ---------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee...........-------hhhhhhhhhhhhhhhhhhhh...eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhh...eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej5 A   3 MYETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDL-------DHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQGN 259
                                    12        22        32        42        52        62     |   -   |    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       
                                                                                            68      76                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:251
 aligned with Q5KYB3_GEOKA | Q5KYB3 from UniProtKB/TrEMBL  Length:257

    Alignment length:257
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       
         Q5KYB3_GEOKA     1 MYETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQGN 257
               SCOP domains d2ej5b_ B: automated matches                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2ej5B01 B:3-201 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                               ---------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeee.hhhhh...hhhhhhhhhhhhhhhhhh....eeeeee............------hhhhhhhhhhhhhhhhhhhh...eeeee..eeehhhhhhhhhh.eeeee...eee.hhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej5 B   3 MYETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLS------DHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQGN 259
                                    12        22        32        42        52        62      |  -   |    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       
                                                                                             69     76
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EJ5)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5KYB3_GEOKA | Q5KYB3)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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