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(-) Description

Title :  SOLUTION STRUCTURE OF THE RHOGAP DOMAIN FROM HUMAN RHO GTPASE ACTIVATING PROTEIN 5 VARIANT
 
Authors :  T. Tomizawa, N. Tochio, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  15 Feb 07  (Deposition) - 21 Aug 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  All Alpha Protein, Gtpase-Activating Protein For Rho Family Members, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Tomizawa, N. Tochio, S. Koshiba, S. Watanabe, T. Harada, T. Kigawa, S. Yokoyama
Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RHO GTPASE ACTIVATING PROTEIN 5 VARIANT
    ChainsA
    EC Number3.6.5.2
    EngineeredYES
    Expression System PlasmidP060123-14
    Expression System Vector TypePLASMID
    FragmentRHOGAP DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2EE4)

(-) Sites  (0, 0)

(no "Site" information available for 2EE4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EE4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EE4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EE4)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHOGAPPS50238 Rho GTPase-activating proteins domain profile.RHG05_HUMAN1262-1449  1A:15-202

(-) Exons   (6, 6)

NMR Structure (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003451221aENSE00001411690chr14:32546495-32546641147RHG05_HUMAN-00--
1.2aENST000003451222aENSE00001373799chr14:32559708-325635923885RHG05_HUMAN1-123912391A:1-6 (gaps)25
1.3aENST000003451223aENSE00001371676chr14:32586346-32586493148RHG05_HUMAN1240-1289501A:7-4236
1.4ENST000003451224ENSE00001188464chr14:32615469-3261554678RHG05_HUMAN1289-1315271A:42-6827
1.5ENST000003451225ENSE00000654999chr14:32619108-32619239132RHG05_HUMAN1315-1359451A:68-11245
1.6ENST000003451226ENSE00000655000chr14:32621629-32621734106RHG05_HUMAN1359-1394361A:112-14736
1.7bENST000003451227bENSE00001214598chr14:32623827-326289345108RHG05_HUMAN1394-15021091A:147-20963

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:209
 aligned with RHG05_HUMAN | Q13017 from UniProtKB/Swiss-Prot  Length:1502

    Alignment length:263
                                  1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453   
         RHG05_HUMAN   1194 GSEEDPLLSPVETWKGGIDNPAITSDQELDDKKMKKKTHKVKEDKKQKKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEIVE 1456
               SCOP domains d2e            e       4a                                   _ A: automated matches                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...------------.-------..-----------------------------------.........hhhhhh......hhhhhhhhhhhhhh............hhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------RHOGAP  PDB: A:15-202 UniProt: 1262-1449                                                                                                                                                    ------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: A:1-6 (gaps) UniProt: 1-1239  Exon 1.3a  PDB: A:7-42 UniProt: 1240-1289         -------------------------Exon 1.5  PDB: A:68-112 UniProt: 1315-1359   ----------------------------------Exon 1.7b  PDB: A:147-209 UniProt: 1394-1502 [INCOMPLETE]       Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------Exon 1.4  PDB: A:42-68     -------------------------------------------Exon 1.6  PDB: A:112-147            -------------------------------------------------------------- Transcript 1 (2)
                2ee4 A    1 GSS------------G-------SS-----------------------------------GWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEIVE  209
                              |      -     |   -   ||    -         -         -         -|       16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206   
                              3            4       5|                                   7                                                                                                                                                                                                          
                                                    6                                                                                                                                                                                                                                              

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EE4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EE4)

(-) Gene Ontology  (16, 16)

NMR Structure(hide GO term definitions)
Chain A   (RHG05_HUMAN | Q13017)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0042169    SH2 domain binding    Interacting selectively and non-covalently with a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007266    Rho protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Rho family of proteins switching to a GTP-bound active state.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0030879    mammary gland development    The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk. Its development starts with the formation of the mammary line and ends as the mature gland cycles between nursing and weaning stages.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0051056    regulation of small GTPase mediated signal transduction    Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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        RHG05_HUMAN | Q130172ee5

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