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(-) Description

Title :  SOLUTION STRUCTURE OF THE SECOND FF DOMAIN OF HUMAN TRANSCRIPTION FACTOR CA150
 
Authors :  W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  05 Jan 07  (Deposition) - 10 Jul 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ff Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Tanabe, S. Suzuki, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The Second Ff Domain Of Human Transcription Factor Ca150
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTION ELONGATION REGULATOR 1
    ChainsA
    EngineeredYES
    Expression System PlasmidP051128-08
    Expression System Vector TypePLASMID
    FragmentFF DOMAIN
    GeneTCERG1, CA150, TAF2S
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCELL-FREE PROTEIN SYNTHESIS
    SynonymTATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR 2S, TRANSCRIPTION FACTOR CA150

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2E71)

(-) Sites  (0, 0)

(no "Site" information available for 2E71)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2E71)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2E71)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2E71)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FFPS51676 FF domain profile.TCRG1_HUMAN659-712
725-779
791-846
896-952
954-1010
1012-1077
  2-
A:725-779
A:792-792
-
-
-

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002967021bENSE00001958061chr5:145826875-14582697197TCRG1_HUMAN1-20200--
1.2ENST000002967022ENSE00000875393chr5:145834619-145834844226TCRG1_HUMAN20-95760--
1.3ENST000002967023ENSE00000875394chr5:145836746-145836898153TCRG1_HUMAN96-146510--
1.4aENST000002967024aENSE00001026741chr5:145838447-145838900454TCRG1_HUMAN147-2981520--
1.6ENST000002967026ENSE00000875396chr5:145843114-145843356243TCRG1_HUMAN298-379820--
1.7ENST000002967027ENSE00000766804chr5:145847904-14584796663TCRG1_HUMAN379-400220--
1.8aENST000002967028aENSE00000766805chr5:145849107-145849307201TCRG1_HUMAN400-467680--
1.9aENST000002967029aENSE00001126961chr5:145850199-145850311113TCRG1_HUMAN467-504380--
1.10ENST0000029670210ENSE00001126952chr5:145851051-14585113989TCRG1_HUMAN505-534300--
1.11bENST0000029670211bENSE00001126945chr5:145858056-145858216161TCRG1_HUMAN534-588550--
1.12ENST0000029670212ENSE00001126936chr5:145859418-14585947457TCRG1_HUMAN588-607200--
1.13aENST0000029670213aENSE00001126927chr5:145859591-14585965767TCRG1_HUMAN607-629230--
1.14cENST0000029670214cENSE00001126919chr5:145862155-145862290136TCRG1_HUMAN629-674461A:710-7101
1.15ENST0000029670215ENSE00001126912chr5:145863103-14586319290TCRG1_HUMAN675-704301A:711-7155
1.16cENST0000029670216cENSE00000766812chr5:145872483-145872601119TCRG1_HUMAN705-744401A:716-74429
1.17ENST0000029670217ENSE00000766813chr5:145878099-145878249151TCRG1_HUMAN744-794511A:744-79249
1.19bENST0000029670219bENSE00000766816chr5:145882938-145883102165TCRG1_HUMAN795-849550--
1.20aENST0000029670220aENSE00000766817chr5:145883387-145883569183TCRG1_HUMAN850-910610--
1.23bENST0000029670223bENSE00000766818chr5:145886591-145886770180TCRG1_HUMAN911-970600--
1.24cENST0000029670224cENSE00000766819chr5:145887436-14588751984TCRG1_HUMAN971-998280--
1.25ENST0000029670225ENSE00001082938chr5:145888708-145888808101TCRG1_HUMAN999-1032340--
1.27dENST0000029670227dENSE00001918127chr5:145890004-1458915241521TCRG1_HUMAN1032-1098670--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:83
 aligned with TCRG1_HUMAN | O14776 from UniProtKB/Swiss-Prot  Length:1098

    Alignment length:119
                                   683       693       703       713       723       733       743       753       763       773       783         
          TCRG1_HUMAN   674 GVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTRG 792
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......------------------------------------.........hhhhhhhhhhhhhh........hhhhhhh....hhhhh...hhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FF  PDB: - UniProt: 659-712            ------------FF  PDB: A:725-779 UniProt: 725-779                    -----------FF PROSITE
           Transcript 1 (1) 1Exon 1.15  PDB: A:711-715     Exon 1.16c  PDB: A:716-744 [INCOMPLETE] ------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------Exon 1.17  PDB: A:744-792 UniProt: 744-794        Transcript 1 (2)
                 2e71 A 710 GSSGSS------------------------------------GERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKESGPSSG 792
                                 |   -         -         -         -  |    723       733       743       753       763       773       783         
                               715                                  716                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2E71)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2E71)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2E71)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)
Chain A   (TCRG1_HUMAN | O14776)
molecular function
    GO:0001103    RNA polymerase II repressing transcription factor binding    Interacting selectively and non-covalently with an RNA polymerase II transcription repressing factor, a protein involved in negative regulation of transcription.
    GO:0001106    RNA polymerase II transcription corepressor activity    Interacting selectively and non-covalently with an RNA polymerase II repressing transcription factor and also with the RNA polymerase II basal transcription machinery in order to stop, prevent, or reduce the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between repressive transcription factors and the basal transcription machinery.
    GO:0070064    proline-rich region binding    Interacting selectively and non-covalently with a proline-rich region, i.e. a region that contains a high proportion of proline residues, in a protein.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003713    transcription coactivator activity    Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
biological process
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCRG1_HUMAN | O147762dk7 2dod 2doe 2dof 2kiq 2kis 2mw9 2mwa 2mwb 2mwd 2mwe 2mwf 2n4r 2n4s 2n4t 2n4u 2n4v 2n4w 2nnt 3hfh 3q1i 4fqg

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