2E44 - JenaLib

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Title :   SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN INSULIN-LIKE GROWTH FACTOR 2 MRNA BINDING PROTEIN 3

Authors :   M. Furue, K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   04 Dec 06 (Deposition) - 05 Jun 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Rrm Domain, Rbd, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Furue, K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Rna Binding Domain In Insulin-Like Growth Factor 2 Mrna Binding Protein 3
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - INSULIN-LIKE GROWTH FACTOR 2 MRNA BINDING PROTEIN 3
	Chains	:	A
	Engineered	:	YES
	Expression System Plasmid	:	P060227-15
	Expression System Vector Type	:	PLASMID
	Fragment	:	RNA RECOGNITION MOTIF
	Gene	:	IGF2BP3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CELL-FREE PROTEIN SYNTHESIS


NMR Structure (20x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2E44)

(no "Site" information available for 2E44)

(no "SS Bond" information available for 2E44)

(no "Cis Peptide Bond" information available for 2E44)

(no "SAP(SNP)/Variant" information available for 2E44)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	IF2B3_HUMAN	2-75 81-156	1	- A:81-156

NMR Structure (6, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000258729	1a	ENSE00001887310	chr7:23510086-23509555	532	IF2B3_HUMAN	1-59	59	1	A:66-72 (gaps)	53
1.3	ENST00000258729	3	ENSE00001207765	chr7:23508161-23508101	61	IF2B3_HUMAN	59-79	21	1	A:72-79 (gaps)	21
1.6	ENST00000258729	6	ENSE00001207762	chr7:23458443-23458395	49	IF2B3_HUMAN	79-95	17	1	A:79-95	17
1.13	ENST00000258729	13	ENSE00000924018	chr7:23401360-23401309	52	IF2B3_HUMAN	96-113	18	1	A:96-113	18
1.14a	ENST00000258729	14a	ENSE00001803586	chr7:23401216-23401153	64	IF2B3_HUMAN	113-134	22	1	A:113-134	22
1.15f	ENST00000258729	15f	ENSE00001731630	chr7:23391205-23390924	282	IF2B3_HUMAN	134-228	95	1	A:134-161	28
1.17g	ENST00000258729	17g	ENSE00001634418	chr7:23387353-23387219	135	IF2B3_HUMAN	228-273	46	0	-	-
1.18b	ENST00000258729	18b	ENSE00001629004	chr7:23385681-23385559	123	IF2B3_HUMAN	273-314	42	0	-	-
1.19	ENST00000258729	19	ENSE00001737270	chr7:23383472-23383337	136	IF2B3_HUMAN	314-359	46	0	-	-
1.20c	ENST00000258729	20c	ENSE00001701957	chr7:23381808-23381683	126	IF2B3_HUMAN	360-401	42	0	-	-
1.21	ENST00000258729	21	ENSE00001207733	chr7:23358873-23358757	117	IF2B3_HUMAN	402-440	39	0	-	-
1.22c	ENST00000258729	22c	ENSE00001794186	chr7:23357332-23357258	75	IF2B3_HUMAN	441-465	25	0	-	-
1.23a	ENST00000258729	23a	ENSE00001733028	chr7:23353272-23353141	132	IF2B3_HUMAN	466-509	44	0	-	-
1.25a	ENST00000258729	25a	ENSE00001686686	chr7:23352467-23352354	114	IF2B3_HUMAN	510-547	38	0	-	-
1.27c	ENST00000258729	27c	ENSE00001207777	chr7:23352079-23349828	2252	IF2B3_HUMAN	548-579	32	0	-	-

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with IF2B3_HUMAN | O00425 from UniProtKB/Swiss-Prot  Length:579

    Alignment length:155
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156     
          IF2B3_HUMAN     7 GNLSENAAPSDLESIFKDAKIPVSGPFLVKTGYAFVDCPDESWALKAIEALSGKIELHGKPIEVEHSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEMAAQ 161
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .---------------------...-------------------------...-------------..........eeeeee....hhhhhhhhhhhhh.eeeeeee......eeeeeee.hhhhhhhhhhhhh.........eeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: - UniProt: 2-75                                            -----RRM  PDB: A:81-156 UniProt: 81-156                                          ----- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:66-72 (gaps) UniProt: 1-59         -------------------Exon 1.6         Exon 1.13         --------------------Exon 1.15f  PDB: A:134-161   Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------Exon 1.3             ---------------------------------Exon 1.14a            --------------------------- Transcript 1 (2)
                 2e44 A  66 G---------------------SSG-------------------------SSG-------------SVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEMAAQ 161
                            |        -         -  | |    -         -         -| |      -      | 76        86        96       106       116       126       136       146       156     
                            |                    67 |                        70 |            73                                                                                        
                           66                      69                          72

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2E44)

(no "CATH Domain" information available for 2E44)

(no "Pfam Domain" information available for 2E44)

NMR Structure(hide GO term definitions)

Chain A (IF2B3_HUMAN | O00425)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003730	mRNA 3'-UTR binding	Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
	GO:0048027	mRNA 5'-UTR binding	Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0045182	translation regulator activity	Any molecular function involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome.
biological process
	GO:0009653	anatomical structure morphogenesis	The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
	GO:0010467	gene expression	The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0051028	mRNA transport	The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0017148	negative regulation of translation	Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0042035	regulation of cytokine biosynthetic process	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cytokines.
	GO:0006417	regulation of translation	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

NMR Structure
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