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(-) Description

Title :  FATTY ACID BINDING OF A DEGV FAMILY PROTEIN FROM THERMUS THERMOPHILUS
 
Authors :  P. H. Rehse, S. Yokoyama, Riken Structural Genomics/Proteomics In (Rsgi)
Date :  11 Jul 06  (Deposition) - 19 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A
Keywords :  Fatty Acid Binding, Degv, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. H. Rehse, S. Yokoyama
Fatty Acid Binding Of A Degv Family Protein From Thermus Thermophilus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DEGV FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: FATTY ACID BINDING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PLM1Ligand/IonPALMITIC ACID
4ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:47 , GLU A:67 , GLU A:105 , HOH A:1033BINDING SITE FOR RESIDUE ZN A 501
2AC2SOFTWARELEU A:28 , THR A:61 , SER A:62 , GLN A:63 , LEU A:92 , SER A:93 , ARG A:170 , LEU A:230 , HIS A:267 , TYR A:276 , HOH A:735 , HOH A:773BINDING SITE FOR RESIDUE PLM A 701
3AC3SOFTWAREARG A:150 , ARG A:151 , HIS A:153 , THR A:189 , LEU A:190 , LYS A:191 , HOH A:711 , HOH A:760 , HOH A:814BINDING SITE FOR RESIDUE GOL A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DT8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DT8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DT8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DT8)

(-) Exons   (0, 0)

(no "Exon" information available for 2DT8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:280
 aligned with Q5SJQ7_THET8 | Q5SJQ7 from UniProtKB/TrEMBL  Length:280

    Alignment length:280
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
         Q5SJQ7_THET8     1 MRITLVTDSTSDLPQDLRGRLGVRVVPLYVNLSGAIYRDWEEITPTEIFQKVREGAAFPTTSQPSPEDFARVYREALEEADHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGMMVLRAKELLEEGQSLEAVLAELERLRRDHFVRFSVATLEFLKRGGRIGGAQAFLGTLLNLKPVLTLKEGRVEAAGRARGEKKAREEILKAFRAWAEGRKRIRAYFLYSGDEDAVAALRQEVLASGLPVEEALVNELGAVIASHTGPGTYGFYAYSL 280
               SCOP domains d2dt8a_ A: automated matches                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -2dt8A01 A:2-150  [code=3.40.50.10170, no name defined]                                                                                               ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhh.hhhhhh....eee..eeee..eeee.....hhhhhhhhhhh.....eee..hhhhhhhhhhhhh....eeeeee......hhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eeeee...hhhhhhhh.hhhhhhhh......eeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dt8 A   1 mRITLVTDSTSDLPQDLRGRLGVRVVPLYVNLSGAIYRDWEEITPTEIFQKVREGAAFPTTSQPSPEDFARVYREALEEADHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGmmVLRAKELLEEGQSLEAVLAELERLRRDHFVRFSVATLEFLKRGGRIGGAQAFLGTLLNLKPVLTLKEGRVEAAGRARGEKKAREEILKAFRAWAEGRKRIRAYFLYSGDEDAVAALRQEVLASGLPVEEALVNELGAVIASHTGPGTYGFYAYSL 280
                            |       10        20        30        40        50        60        70        80        90       100       110       120   ||  130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
                            |                                                                                                                        124-MSE                                                                                                                                                        
                            1-MSE                                                                                                                     125-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DT8)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5SJQ7_THET8 | Q5SJQ7)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.

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