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(-) Description

Title :  THE SOLUTION STRUCTURE OF HORSESHOE CRAB ANTIMICROBIAL PEPTIDE TACHYSTATIN B WITH THE INHIBITORY CYSTINE-KNOT MOTIF
 
Authors :  N. Fujitani, T. Kohno
Date :  16 Jan 06  (Deposition) - 23 Jan 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Antimicrobial, Cystine-Knot, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Fujitani, T. Kouno, T. Nakahara, K. Takaya, T. Osaki, S. Kawabata, M. Mizuguchi, T. Aizawa, M. Demura, S. Nishimura, K. Kawano
The Solution Structure Of Horseshoe Crab Antimicrobial Peptide Tachystatin B With An Inhibitory Cystine-Knot Motif
J. Pept. Sci. V. 13 269 2007
PubMed-ID: 17394123  |  Reference-DOI: 10.1002/PSC.846
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TACHYSTATIN-B1
    Cell: HEMOCYTE
    Chains: A
    Organism Scientific: TACHYPLEUS TRIDENTATUS
    Organism Taxid: 6853

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:4 -A:20
2A:11 -A:25
3A:19 -A:37

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:42
 aligned with TACB1_TACTR | P0C1Z8 from UniProtKB/Swiss-Prot  Length:42

    Alignment length:42
                                    10        20        30        40  
           TACB1_TACTR    1 YVSCLFRGARCRVYSGRSCCFGYYCRRDFPGSIFGTCSRRNF 42
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains 2dcvA00 A:1-42                             CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author .........eee..........eeeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                  2dcv A  1 YVSCLFRGARCRVYSGRSCCFGYYCRRDFPGSIFGTCSRRNF 42
                                    10        20        30        40
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(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Few Secondary Structures (1120)

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(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (TACB1_TACTR | P0C1Z8)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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2dcw ISOPEPTIDE OF THIS PROTEIN