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(-) Description

Title :  SOLUTION STRUCTURE OF CCCH TYPE ZINC-FINGER DOMAIN 3 IN ZINC FINGER CCCH-TYPE DOMAIN CONTAINING 7A
 
Authors :  C. Abe, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  12 Dec 05  (Deposition) - 12 Jun 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ccch Zinc-Finger, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Abe, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of Ccch Type Zinc-Finger Domain 3 In Zinc Finger Ccch-Type Domain Containing 7A
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER CCCH-TYPE DOMAIN CONTAINING PROTEIN 7A
    Chains: A
    Engineered: YES
    Expression System Plasmid: P050302-09
    Expression System Vector Type: PLASMID
    Fragment: CCCH-TYPE ZINC FINGER MOTIF
    Gene: ZC3H7A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:907 , CYS A:915 , CYS A:921 , HIS A:925BINDING SITE FOR RESIDUE ZN A 1085

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D9M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2D9M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D9M)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_C3H1PS50103 Zinc finger C3H1-type profile.Z3H7A_HUMAN634-656
769-797
906-928		  1-
-
A:906-928

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003965162aENSE00001525268chr16:11876408-11876143266Z3H7A_HUMAN1-23230--
1.3ENST000003965163ENSE00001288685chr16:11875320-1187528140Z3H7A_HUMAN23-36140--
1.4ENST000003965164ENSE00001169049chr16:11873219-11873022198Z3H7A_HUMAN37-102660--
1.5ENST000003965165ENSE00001291101chr16:11870765-11870607159Z3H7A_HUMAN103-155530--
1.6ENST000003965166ENSE00001318130chr16:11870388-1187030881Z3H7A_HUMAN156-182270--
1.7ENST000003965167ENSE00001297283chr16:11870214-1187017639Z3H7A_HUMAN183-195130--
1.8ENST000003965168ENSE00001303895chr16:11868869-1186883634Z3H7A_HUMAN196-207120--
1.9ENST000003965169ENSE00001323585chr16:11868375-11868092284Z3H7A_HUMAN207-301950--
1.10ENST0000039651610ENSE00001162524chr16:11864843-11864639205Z3H7A_HUMAN302-370690--
1.11ENST0000039651611ENSE00000829717chr16:11862951-1186288765Z3H7A_HUMAN370-391220--
1.12ENST0000039651612ENSE00000829716chr16:11862357-11862171187Z3H7A_HUMAN392-454630--
1.13ENST0000039651613ENSE00000829715chr16:11861434-11861273162Z3H7A_HUMAN454-508550--
1.14ENST0000039651614ENSE00000829714chr16:11859541-11859345197Z3H7A_HUMAN508-573660--
1.15ENST0000039651615ENSE00000829713chr16:11859009-11858909101Z3H7A_HUMAN574-607340--
1.16ENST0000039651616ENSE00000829712chr16:11857515-11857334182Z3H7A_HUMAN607-668620--
1.17ENST0000039651617ENSE00000829711chr16:11856603-1185652777Z3H7A_HUMAN668-693260--
1.18ENST0000039651618ENSE00000829710chr16:11855899-11855766134Z3H7A_HUMAN694-738450--
1.19ENST0000039651619ENSE00000829709chr16:11855367-11855262106Z3H7A_HUMAN738-773360--
1.20ENST0000039651620ENSE00000829708chr16:11852395-11852287109Z3H7A_HUMAN774-810370--
1.21ENST0000039651621ENSE00000829706chr16:11850226-11850093134Z3H7A_HUMAN810-854450--
1.22ENST0000039651622ENSE00000829705chr16:11846688-11846525164Z3H7A_HUMAN855-909551A:885-909 (gaps)47
1.23aENST0000039651623aENSE00001525238chr16:11845362-11844443920Z3H7A_HUMAN909-971631A:909-953 (gaps)53

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:69
 aligned with Z3H7A_HUMAN | Q8IWR0 from UniProtKB/Swiss-Prot  Length:971

    Alignment length:99
                                   872       882       892       902       912       922       932       942       952         
          Z3H7A_HUMAN   863 GKNCNSEKQWQGHISSEKHKEKVFHTEDDQYCWQHRFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKARKDHLIGPNDNDFG 961
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......----------------------................hhhhhhh............hhhhhhhhhhhhhhhh.......-----....---. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------ZF_C3H1  PDB: A:906-928--------------------------------- PROSITE
           Transcript 1 (1) Exon 1.22  PDB: A:885-909 (gaps) [INCOMPLETE]  ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.23a  PDB: A:909-953 (gaps) UniProt: 909-971    Transcript 1 (2)
                 2d9m A 885 GSSGSS----------------------GQYCWQHRFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS-----GPSS---G 953
                                 |   -         -       892       902       912       922       932       942     |   - |  |   |
                               890                    891                                                      948   949  | 953
                                                                                                                        952
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2D9M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2D9M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D9M)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (Z3H7A_HUMAN | Q8IWR0)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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