2D8H - JenaLib

Title :   SOLUTION STRUCTURE OF THE SH3 DOMAIN OF HYPOTHETICAL PROTEIN SH3YL1

Authors :   X. R. Qin, T. Nagasima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   06 Dec 05 (Deposition) - 06 Jun 06 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Sh3 Domain, Hypothetical Protein Sh3Yl1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. R. Qin, T. Nagasima, F. Hayashi, S. Yokoyama
Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3Yl1
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

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Sequence-Structure Mapping

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PROSITE Motifs (1, 1)

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Sequences/Alignments

NMR Structure

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:80
 aligned with SH3Y1_HUMAN | Q96HL8 from UniProtKB/Swiss-Prot  Length:342

    Alignment length:91
                                                                                                              342      
                                   267       277       287       297       307       317       327       337    |    - 
          SH3Y1_HUMAN   258 GSQSNRNEYKLYPGLSSYHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN------   -
               SCOP domains d2d8           ha_ A: automated matches                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-----------.............eeee....ee.......ee....eeeeee.......eeeeee..eeeeee.hhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------SH3  PDB: A:15-74 UniProt: 283-342                          ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 2d8h A   1 GSSG-----------SSGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSGPSSG  80
                               |     -     |   9        19        29        39        49        59        69        79 
                               4           5

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

NMR Structure(hide GO term definitions)

Chain A (SH3Y1_HUMAN | Q96HL8)

molecular function
	GO:0019902	phosphatase binding	Interacting selectively and non-covalently with any phosphatase.
	GO:0035091	phosphatidylinositol binding	Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006661	phosphatidylinositol biosynthetic process	The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
	GO:1900027	regulation of ruffle assembly	Any process that modulates the frequency, rate or extent of ruffle assembly.
cellular component
	GO:0032587	ruffle membrane	The portion of the plasma membrane surrounding a ruffle.

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