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(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA1254 (WILD TYPE) FROM THERMUS THERMOPHILUS HB8
 
Authors :  E. Mizohata, T. Uchikubo, Y. Kinoshita, T. Terada, M. Shirouzu, S. Kura S. Yokoyama, Riken Structural Genomics/Proteomics Initiative
Date :  21 Oct 05  (Deposition) - 21 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Mizohata, T. Uchikubo, Y. Kinoshita, T. Terada, M. Shirouzu, S. Kuramitsu, S. Yokoyama
Crystal Structure Of Ttha1254 (Wild Type) From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TTHA1254
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2D4P)

(-) Sites  (0, 0)

(no "Site" information available for 2D4P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D4P)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:118 -Pro A:119

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D4P)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2D4P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Q5SIW0_THET8 | Q5SIW0 from UniProtKB/TrEMBL  Length:141

    Alignment length:130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
         Q5SIW0_THET8     1 MRFRPFTEEDLDRLNRLAGKRPVSLGALRFFARTGHSFLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGPLVLAVRVLGSR 130
               SCOP domains d2d4pa1 A:1-130 Hypothetical protein TTHA1254                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhh......hhhhhhhhhhhh..eeeee..eeeeeeeeeeee....eeeeeeeeee.hhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d4p A   1 MRFRPFTEEDLDRLNRLAGKRPVSLGALRFFARTGHSFLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGPLVLAVRVLGSR 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130


Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Q72J89_THET2 | Q72J89 from UniProtKB/TrEMBL  Length:141

    Alignment length:130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
         Q72J89_THET2     1 MRFRPFTEEDLDRLNRLAGKRPVSLGALRFFARTGHSFLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGPLVLAVRVLGSR 130
               SCOP domains d2d4pa1 A:1-130 Hypothetical protein TTHA1254                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhh......hhhhhhhhhhhh..eeeee..eeeeeeeeeeee....eeeeeeeeee.hhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2d4p A   1 MRFRPFTEEDLDRLNRLAGKRPVSLGALRFFARTGHSFLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGPLVLAVRVLGSR 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2D4P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D4P)

(-) Gene Ontology  (1, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q72J89_THET2 | Q72J89)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.

Chain A   (Q5SIW0_THET8 | Q5SIW0)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.

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  Cis Peptide Bonds
    Gly A:118 - Pro A:119   [ RasMol ]  
 
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(-) Related Entries Specified in the PDB File

2d4o THE SAME PROTEIN(I68M) RELATED ID: TTK003001619.1 RELATED DB: TARGETDB