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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN RV1873 FROM MYCOBACTERIUM TUBERCULOSIS AT 1.38 A
 
Authors :  C. R. Garen, M. M. Cherney, E. M. Bergmann, M. N. G. James, Tb Structural Genomics Consortium (Tbsgc)
Date :  17 Jan 07  (Deposition) - 30 Jan 07  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.38
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Unknown Function, Mycobacterium Tuberculosis, Hypothetical Protein, Right-Handed Superhelix, Tb Structural Genomics Consortium, Tbsgc, Psi, Protein Structure Initiative (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. R. Garen, M. M. Cherney, E. M. Bergmann, M. N. G. James
The Molecular Structure Of Rv1873, A Conserved Hypothetical Protein From Mycobacterium Tuberculosis, At 1. 38A Resolution
Acta Crystallogr. , Sect. F V. 62 1201 2006
PubMed-ID: 17142896  |  Reference-DOI: 10.1107/S1744309106046902

(-) Compounds

Molecule 1 - RV1873
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:19 , ASN A:86 , GLN A:89 , LYS A:128 , HOH A:2105 , HOH A:2157BINDING SITE FOR RESIDUE SO4 A1146
2AC2SOFTWARESER A:23 , GLU A:27 , HOH A:2042 , HOH A:2158 , HOH A:2160BINDING SITE FOR RESIDUE GOL A1147
3AC3SOFTWARETRP A:39 , SER A:50 , SER A:51 , ALA A:54 , LYS A:104 , HOH A:2161BINDING SITE FOR RESIDUE GOL A1148

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JEK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:99 -Pro A:100

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:140
 aligned with O07756_MYCTU | O07756 from UniProtKB/TrEMBL  Length:145

    Alignment length:140
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145
         O07756_MYCTU     6 DPFDLKRFVYAQAPVYRSVVEELRAGRKRGHWMWFVFPQLRGLGSSPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDLKLCSSMTLFARATDANQDFVALLAKYYGGGEDRRTVALLAVT 145
               SCOP domains d2jeka1 A:6-145 Hypothetical protein Rv1873 (MT1922)                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains DUF1810-2jekA01 A:6-143                                                                                                                   -- Pfam domains
         Sec.struct. author ....hhhhhhhhh.hhhhhhhhhhh......hhhhhh........hhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jek A   6 DPFDLKRFVYAQAPVYRSVVEELRAGRKRGHWMWFVFPQLRGLGSSPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPPDDLKLCSSMTLFARATDANQDFVALLAKYYGGGEDRRTVALLAVT 145
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JEK)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF1810] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  2jek
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