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(-) Description

Title :  CRYSTAL STRUCTURE OF THE THERMUS THERMOPHILUS HYPOTHETICAL PROTEIN TTHA0967, A THIOESTERASE SUPERFAMILY MEMBER
 
Authors :  A. A. Pioszak, K. Murayama, M. Shirouzu, S. Yokoyama, Riken Structura Genomics/Proteomics Initiative (Rsgi)
Date :  27 Jun 05  (Deposition) - 27 Dec 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Thioesterase, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Pioszak, K. Murayama, M. Shirouzu, S. Yokoyama
Crystal Structure Of The Thermus Thermophilus Hypothetical Protein Ttha0967, A Thioesterase Superfamily Member
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THIOESTERASE FAMILY PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA0967
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: HYPOTHETICAL PROTEIN TTHA0967

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 26)

Asymmetric Unit (2, 26)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 13)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 13)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:38 , LYS A:41 , TYR B:37 , TRP B:38BINDING SITE FOR RESIDUE EDO A 501
2AC2SOFTWAREARG A:79 , ARG A:81 , ASN A:102 , HOH A:598BINDING SITE FOR RESIDUE EDO A 502
3AC3SOFTWAREPHE A:127 , HOH A:544 , HOH A:573 , HOH B:172BINDING SITE FOR RESIDUE EDO A 503
4AC4SOFTWARETRP C:38 , LYS C:41 , TRP D:38BINDING SITE FOR RESIDUE EDO C 504
5AC5SOFTWAREGLU C:44 , ARG C:48 , ILE C:62 , GLY C:63 , GLN C:115 , PHE D:24BINDING SITE FOR RESIDUE EDO C 505
6AC6SOFTWAREARG C:48 , GLU C:60 , LYS C:120 , HOH C:574BINDING SITE FOR RESIDUE EDO C 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CWZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CWZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CWZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CWZ)

(-) Exons   (0, 0)

(no "Exon" information available for 2CWZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
 aligned with Q5SJP1_THET8 | Q5SJP1 from UniProtKB/TrEMBL  Length:141

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
         Q5SJP1_THET8     1 MRPIPEGYEAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAER 138
               SCOP domains d2cwza1 A:1-138 Hypothetical protein TTHA0967                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeee.hhh.eeee...eeeeeeehhhhhhhhhhhhhhhhhh......eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cwz A   1 mRPIPEGYEAVFETVVTPEmTVRFEELGPVHPVYATYWmVKHmELAGRKIILPFLEEGEEGIGSYVEARHLASALPGmRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAER 138
                            |       10        20        30        40  |     50        60        70       |80        90       100       110       120       130        
                            |                 20-MSE             39-MSE                                 78-MSE                                                        
                            1-MSE                                    43-MSE                                                                                           


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q5SJP1_THET8 | Q5SJP1 from UniProtKB/TrEMBL  Length:141

    Alignment length:137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       
         Q5SJP1_THET8     1 MRPIPEGYEAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAE 137
               SCOP domains d2cwzb_ B: Hypothetical protein TTHA0967                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee.hhh.eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cwz B   1 mRPIPEGYEAVFETVVTPEmTVRFEELGPVHPVYATYWmVKHmELAGRKIILPFLEEGEEGIGSYVEARHLASALPGmRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAE 137
                            |       10        20        30        40  |     50        60        70       |80        90       100       110       120       130       
                            1-MSE             20-MSE             39-MSE                                 78-MSE                                                       
                                                                     43-MSE                                                                                          


Chain C from PDB  Type:PROTEIN  Length:137
 aligned with Q5SJP1_THET8 | Q5SJP1 from UniProtKB/TrEMBL  Length:141

    Alignment length:137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       
         Q5SJP1_THET8     1 MRPIPEGYEAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAE 137
               SCOP domains d2cwzc_ C: Hypothetical protein TTHA0967                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee.hhh.eeee...eeeeeeehhhhhhhhhhhhhhhhhh......eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cwz C   1 mRPIPEGYEAVFETVVTPEmTVRFEELGPVHPVYATYWmVKHmELAGRKIILPFLEEGEEGIGSYVEARHLASALPGmRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAE 137
                            |       10        20        30        40  |     50        60        70       |80        90       100       110       120       130       
                            1-MSE             20-MSE             39-MSE                                 78-MSE                                                       
                                                                     43-MSE                                                                                          


Chain D from PDB  Type:PROTEIN  Length:137
 aligned with Q5SJP1_THET8 | Q5SJP1 from UniProtKB/TrEMBL  Length:141

    Alignment length:137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       
         Q5SJP1_THET8     1 MRPIPEGYEAVFETVVTPEMTVRFEELGPVHPVYATYWMVKHMELAGRKIILPFLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAE 137
               SCOP domains d2cwzd_ D: Hypothetical protein TTHA0967                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee.hhh.eeee...eeeeeeehhhhhhhhhhhhhhhhhh......eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cwz D   1 mRPIPEGYEAVFETVVTPEmTVRFEELGPVHPVYATYWmVKHmELAGRKIILPFLEEGEEGIGSYVEARHLASALPGmRVRVVARHEKTEGNRVYARVEAYNELGDLIGVGRTEQVILPKAKVEALFRRLKERWEAE 137
                            |       10        20        30        40  |     50        60        70       |80        90       100       110       120       130       
                            1-MSE             20-MSE             39-MSE                                 78-MSE                                                       
                                                                     43-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CWZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CWZ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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