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(-) Description

Title :  CRYSTAL STRUCTURE OF A CONSERVED HYPOTHETICAL PROTEIN FROM THERMUS THERMOPHILUS HB8
 
Authors :  A. Ebihara, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  16 Jun 05  (Deposition) - 16 Dec 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Alpha And Beta Protein (A/B), Beta Barrel, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ebihara, S. Yokoyama, S. Kuramitsu
Crystal Structure Of A Conserved Hypothetical Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BACTERIAL FLUORINATING ENZYME HOMOLOG
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274
    Synonym: HYPOTHETICAL PROTEIN TTHA0338

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2CW5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CW5)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ala A:28 -Pro A:29
2Gly A:173 -Pro A:174
3Gly B:173 -Pro B:174
4Gly C:173 -Pro C:174

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CW5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CW5)

(-) Exons   (0, 0)

(no "Exon" information available for 2CW5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
 aligned with Q5SLF5_THET8 | Q5SLF5 from UniProtKB/TrEMBL  Length:255

    Alignment length:255
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     
         Q5SLF5_THET8     1 MRPVYFLSDFGLEDPYVAVVKAVLAERAPGPAVVDLAHALPPQDLRRAAYALFEALPYLPEGAVVLAVVDPGVGTARRAVAALGRWTYVGPDNGLFTLAWLLDPPRRAFLLEPPRPRPKAALPGWAPGEATFHGRDVFAPAAAHLALGLPPEGLGPEVPVETLARLPLALTEGPEGEVLTFDRFGNAITTLLRAPVGGFVEVGGRRVPVRRTFGEVPEGAPVAYLGSAGLLEVAVNRGSAREALGLKEGMPVRLL 255
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhh.-.....eeeee......hhhhhhhhhhhhhhhh....eeeee..........eeeee...eeeee....hhhhhhhh...eeee....-------------------hhhhhhhhhhhhhh..hhhhhh.eehhhhh...........eeeeeee.....eee.........eeee..eeee............eeeee.....eeeee...hhhhhh......eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cw5 A   1 mRPVYFLSDFGLEDPYVAVVKAVLAE-APGPAVVDLAHALPPQDLRRAAYALFEALPYLPEGAVVLAVVDPGVGTARRAVAALGRWTYVGPDNGLFTLAWLLDPPRRAFLLEPP-------------------GRDVFAPAAAHLALGLPPEGLGPEVPVETLARLPLALTEGPEGEVLTFDRFGNAITTLLRAPVGGFVEVGGRRVPVRRTFGEVPEGAPVAYLGSAGLLEVAVNRGSAREALGLKEGmPVRLL 255
                            |       10        20     | |30        40        50        60        70        80        90       100       110   |     -         -   |   140       150       160       170       180       190       200       210       220       230       240       250     
                            |                       26 |                                                                                   114                 134                                                                                                                 250-MSE 
                            1-MSE                     28                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:224
 aligned with Q5SLF5_THET8 | Q5SLF5 from UniProtKB/TrEMBL  Length:255

    Alignment length:255
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     
         Q5SLF5_THET8     1 MRPVYFLSDFGLEDPYVAVVKAVLAERAPGPAVVDLAHALPPQDLRRAAYALFEALPYLPEGAVVLAVVDPGVGTARRAVAALGRWTYVGPDNGLFTLAWLLDPPRRAFLLEPPRPRPKAALPGWAPGEATFHGRDVFAPAAAHLALGLPPEGLGPEVPVETLARLPLALTEGPEGEVLTFDRFGNAITTLLRAPVGGFVEVGGRRVPVRRTFGEVPEGAPVAYLGSAGLLEVAVNRGSAREALGLKEGMPVRLL 255
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhh....eeeee.------...eeeee...eeeee......hhhhhh...eeee..---------------------hhhhhhhhhhhhhh..hhhhh..eehhhhh...........eeeeeee.....eee.........eeee..eeee.....----...eeeee.....eeeee...hhhhhh......eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cw5 B   1 mRPVYFLSDFGLEDPYVAVVKAVLAERAPGPAVVDLAHALPPQDLRRAAYALFEALPYLPEGAVVLAVV------ARRAVAALGRWTYVGPDNGLFTLAWLLDPPRRAFLLE---------------------GRDVFAPAAAHLALGLPPEGLGPEVPVETLARLPLALTEGPEGEVLTFDRFGNAITTLLRAPVGGFVEVGGRRVPVRRTF----EGAPVAYLGSAGLLEVAVNRGSAREALGLKEGmPVRLL 255
                            |       10        20        30        40        50        60        |-     |  80        90       100       110 |       -         -   |   140       150       160       170       180       190       200       210  |    220       230       240       250     
                            1-MSE                                                              69     76                                 112                   134                                                                            213  218                             250-MSE 


Chain C from PDB  Type:PROTEIN  Length:238
 aligned with Q5SLF5_THET8 | Q5SLF5 from UniProtKB/TrEMBL  Length:255

    Alignment length:255
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     
         Q5SLF5_THET8     1 MRPVYFLSDFGLEDPYVAVVKAVLAERAPGPAVVDLAHALPPQDLRRAAYALFEALPYLPEGAVVLAVVDPGVGTARRAVAALGRWTYVGPDNGLFTLAWLLDPPRRAFLLEPPRPRPKAALPGWAPGEATFHGRDVFAPAAAHLALGLPPEGLGPEVPVETLARLPLALTEGPEGEVLTFDRFGNAITTLLRAPVGGFVEVGGRRVPVRRTFGEVPEGAPVAYLGSAGLLEVAVNRGSAREALGLKEGMPVRLL 255
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhhhh.------.eeee......hhhhhhhhhhhhhhhh....eeeee..-------.eeeee...eeeee......hhhhhh...eeee.....................hhhhhhhhhhhhhhhhh.hhhhh..eehhhhh...........eeeeeee.....eee.........eeee..eeee......----..eeeee.....eeeee...hhhhhh......eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cw5 C   1 mRPVYFLSDFGLEDPYVAVVKAVLAE------VVDLAHALPPQDLRRAAYALFEALPYLPEGAVVLAVVD-------RAVAALGRWTYVGPDNGLFTLAWLLDPPRRAFLLEPPRPRPKAALPGWAPGEATFHGRDVFAPAAAHLALGLPPEGLGPEVPVETLARLPLALTEGPEGEVLTFDRFGNAITTLLRAPVGGFVEVGGRRVPVRRTFG----GAPVAYLGSAGLLEVAVNRGSAREALGLKEGmPVRLL 255
                            |       10        20     |   -  |     40        50        60        70       |80        90       100       110       120       130       140       150       160       170       180       190       200       210   |   220       230       240       250     
                            1-MSE                   26     33                                   70      78                                                                                                                                     214  219                            250-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2CW5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CW5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CW5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2CW5)

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  Cis Peptide Bonds
    Ala A:28 - Pro A:29   [ RasMol ]  
    Gly A:173 - Pro A:174   [ RasMol ]  
    Gly B:173 - Pro B:174   [ RasMol ]  
    Gly C:173 - Pro C:174   [ RasMol ]  
 

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