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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TT1486 FROM THERMUS THERMOPHILUS HB8
 
Authors :  S. Satoh, N. Nakagawa, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  25 May 05  (Deposition) - 25 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Thermus Thermophilus Hb8, Conserved Hypothetical Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Satoh, N. Nakagawa, S. Yokoyama, S. Kuramitsu
Crystal Structure Of The Conserved Hypothetical Protein Tt1486 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN TT1486
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2CU5)

(-) Sites  (0, 0)

(no "Site" information available for 2CU5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CU5)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:118 -Pro A:119
2Gly B:118 -Pro B:119
3Gly C:118 -Pro C:119

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CU5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CU5)

(-) Exons   (0, 0)

(no "Exon" information available for 2CU5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with Q5SHL7_THET8 | Q5SHL7 from UniProtKB/TrEMBL  Length:129

    Alignment length:129
                                    10        20        30        40        50        60        70        80        90       100       110       120         
         Q5SHL7_THET8     1 MEGVVRLEVPTPEEGFVNITRKVEAALSGHTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRLL 129
               SCOP domains d2cu5a_ A: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...eeeehhhhhhhh.....eeeeee.....eeeeee...hhhhhhhhhhhhhhhh............hhhhhhhhhhhh.eeeeeee..ee......eeeeee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cu5 A   1 MEGVVRLEVPTPEEGFVNITRKVEAALSGHTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRLL 129
                                    10        20        30        40        50        60        70        80        90       100       110       120         


Chain B from PDB  Type:PROTEIN  Length:127
 aligned with Q5SHL7_THET8 | Q5SHL7 from UniProtKB/TrEMBL  Length:129

    Alignment length:127
                                    12        22        32        42        52        62        72        82        92       102       112       122       
         Q5SHL7_THET8     3 GVVRLEVPTPEEGFVNITRKVEAALSGHTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRLL 129
               SCOP domains d2cu5b_ B: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeehhhhhhhhhh...eeeeee.....eeeeee...hhhhhhhhhhhhhhhh............hhhhhhhhhhhh.eeeeeee..ee......eeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cu5 B   3 GVVRLEVPTPEEGFVNITRKVEAALSGHTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRLL 129
                                    12        22        32        42        52        62        72        82        92       102       112       122       


Chain C from PDB  Type:PROTEIN  Length:126
 aligned with Q5SHL7_THET8 | Q5SHL7 from UniProtKB/TrEMBL  Length:129

    Alignment length:126
                                    13        23        33        43        53        63        73        83        93       103       113       123      
         Q5SHL7_THET8     4 VVRLEVPTPEEGFVNITRKVEAALSGHTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRLL 129
               SCOP domains d2cu5c_ C: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....eeeehhhhhhh......eeeeee.....eeeeee....hhhhhhhhhhhhhhh............hhhhhhhhhhhh.eeeeeee..ee......eeeeee.....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cu5 C   4 VVRLEVPTPEEGFVNITRKVEAALSGHTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRLL 129
                                    13        23        33        43        53        63        73        83        93       103       113       123
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CU5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CU5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2CU5)

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  Cis Peptide Bonds
    Gly A:118 - Pro A:119   [ RasMol ]  
    Gly B:118 - Pro B:119   [ RasMol ]  
    Gly C:118 - Pro C:119   [ RasMol ]  
 

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