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(-) Description

Title :  SOLUTION STRUCTURE OF RSGI RUH-040, AN ACBP DOMAIN FROM HUMAN CDNA
 
Authors :  A. Z. M. Ruhul Momen, H. Hirota, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  18 May 05  (Deposition) - 18 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Acyl Coa Binding Protein, Coa Binding Protein, Lipid Binding Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Z. M. Ruhul Momen, H. Hirota, F. Hayashi, S. Yokoyama
Solution Structure Of Rsgi Ruh-040, An Acbp Domain From Human Cdna
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACYL-COENZYME A BINDING DOMAIN CONTAINING 6
    Chains: A
    Engineered: YES
    Expression System Plasmid: P040830-11
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS (E.COLI)
    Synonym: ACYL COA BINDING DOMAIN, ACBP

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2COP)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACB_2PS51228 Acyl-CoA-binding (ACB) domain profile.ACBD6_HUMAN42-127  1A:8-93

(-) Exons   (0, 0)

(no "Exon" information available for 2COP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with ACBD6_HUMAN | Q9BR61 from UniProtKB/Swiss-Prot  Length:282

    Alignment length:135
                                    22        32        42        52        62        72        82        92       102       112       122       132       142     
          ACBD6_HUMAN    13 GDSGGELSSGDDSGEVEFPHSPEIEETSCLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEKKGKEANTGFGGPVIS 147
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---...-------------------hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh................----..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------ACB_2  PDB: A:8-93 UniProt: 42-127                                                    -------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cop A   1 GSSG---SSG-------------------LAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEKKGKEAS----GPSSG 109
                               |   | 7         -         8        18        28        38        48        58        68        78        88        98     |   -|    
                               4   5 7                   8                                                                                             104  105
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2COP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2COP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2COP)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (ACBD6_HUMAN | Q9BR61)
molecular function
    GO:0000062    fatty-acyl-CoA binding    Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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