2CO3 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   SALMONELLA ENTERICA SAFA PILIN, HEAD-TO-TAIL SWAPPED DIMER OF NTD1 MUTANT

Authors :   H. Remaut, R. J. Rose, T. J. Hannan, S. J. Hultgren, S. E. Radford, A. E. Ashcroft, G. Waksman

Date :   25 May 06 (Deposition) - 27 Jun 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.78

Chains :   Asym./Biol. Unit : A,B

Keywords :   Pilus Subunit, Adhesion, Pathogenesis, Fibril Protein, Fold Complementation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Remaut, R. J. Rose, T. J. Hannan, S. J. Hultgren, S. E. Radford, A. E. Ashcroft, G. Waksman
Donor-Strand Exchange In Chaperone-Assisted Pilus Assembly Proceeds Through A Concerted Beta-Strand Displacement Mechanism
Mol. Cell V. 22 831 2006
PubMed-ID: 16793551 | Reference-DOI: 10.1016/J.MOLCEL.2006.05.033

Molecule 1 - SAFA PILUS SUBUNIT
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRC99A
	Expression System Strain	:	C600
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 27-28 AND 36-170
	Organism Scientific	:	SALMONELLA TYPHIMURIUM
	Organism Taxid	:	99287
	Strain	:	LT2

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2CO3)

(no "Site" information available for 2CO3)

(no "SS Bond" information available for 2CO3)

(no "Cis Peptide Bond" information available for 2CO3)

(no "SAP(SNP)/Variant" information available for 2CO3)

(no "PROSITE Motif" information available for 2CO3)

(no "Exon" information available for 2CO3)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:135
 aligned with Q8ZRK4_SALTY | Q8ZRK4 from UniProtKB/TrEMBL  Length:170

    Alignment length:142
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166  
         Q8ZRK4_SALTY    27 GSFLPNSEQQKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGY 168
               SCOP domains ---------d2co3a1 A:10-142 SafA pilus subunit                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-------.eeeeeee......eeeeee......ee.....eeeeeeee.....eeeeee...........eeeee......eeeeeehhhhhh...eeeee..eeeeeee..eeeeeee.....ee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2co3 A   1 GS-------QKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGY 142
                             |      10        20        30        40        50        60        70        80        90       100       110       120       130       140  
                             2      10

Chain B from PDB  Type:PROTEIN  Length:136
 aligned with Q8ZRK4_SALTY | Q8ZRK4 from UniProtKB/TrEMBL  Length:170

    Alignment length:143
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166   
         Q8ZRK4_SALTY    27 GSFLPNSEQQKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQ 169
               SCOP domains d2       co3b_ B: automated matches                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .e-------eeeeeeee......eeeeee......ee.....eeeeeeee.....eeeeee...ee......eeeee......eeeeeehhhhhh....eeee..eeeeeee....eeeee.....ee..eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2co3 B   1 GS-------QKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYPITLDVVGYQ 143
                             |      10        20        30        40        50        60        70        80        90       100       110       120       130       140   
                             2      10

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: Pilus subunits (59)

Protein domain: automated matches (16)

Salmonella typhimurium [TaxId: 99287] (2)

d2co3b_

Protein domain: SafA pilus subunit (4)

Salmonella typhimurium [TaxId: 90371] (4)

d2co3a1

A:10-142

(no "CATH Domain" information available for 2CO3)

(no "Pfam Domain" information available for 2CO3)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2CO3)

Asymmetric/Biological Unit
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UniProtKB/TrEMBL
	Q8ZRK4_SALTY \| Q8ZRK4	:	2cny 2cnz 2co1 2co2 2co4 2co6 2co7 3cre 3crf

2cny	SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA NTE PEPTIDE (I15A MUTANT)
2cnz	SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA NTE PEPTIDE (V13A MUTANT)
2co1	SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA NTE PEPTIDE (F17A MUTANT)
2co2	SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA NTE PEPTIDE (F3A MUTANT)
2co4	SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA NTE PEPTIDE
2co6	SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH THE SAFB CHAPERONE (TYPE I)
2co7	SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH THE SAFB CHAPERONE (TYPE II)

Description

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Ligands, Modified Residues, Ions (0, 0)

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SCOP Domains (2, 2)

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