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(-) Description

Title :  ENDO-1,3(4)-BETA-GLUCANASE FROM PHANEROCHAETE CHRYSOSPORIUM, SOLVED USING NATIVE SULFUR SAD, EXHIBITING INTACT HEPTASACCHARIDE GLYCOSYLATION
 
Authors :  J. Vasur, R. Kawai, K. Igarashi, M. Sandgren, M. Samejima, J. Stahlberg
Date :  25 Apr 06  (Deposition) - 25 Oct 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Glycosyl Hydrolase, Gh16, Family 16, Laminarinase, Laminarin, Beta-Glucanase, Basidiomycete, White Rot Fungus, Gh7, Beta-1, 3/1, 6-Glucan, Lam16A, Pichea Pastoris, Extracellular, Beta Sandwich, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Vasur, R. Kawai, A. M. Larsson, K. Igarashi, M. Sandgren, M. Samejima, J. Stahlberg
X-Ray Crystallographic Native Sulfur Sad Structure Determination Of Laminarinase Lam16A From Phanerochaete Chrysosporium.
Acta Crystallogr. , Sect. D V. 62 1422 2006
PubMed-ID: 17057348  |  Reference-DOI: 10.1107/S0907444906036407

(-) Compounds

Molecule 1 - PUTATIVE LAMINARINASE
    Chains: A
    EC Number: 3.2.1.6
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: LAM 16A-PPICZALPHAA
    Expression System Strain: KM71H
    Expression System Taxid: 4922
    Expression System Vector: PPICZ-ALPHA-A (INVITROGEN)
    Organism Common: WHITE-ROT FUNGUS
    Organism Scientific: PHANEROCHAETE CHRYSOSPORIUM
    Organism Taxid: 5306
    Strain: K-3
    Synonym: GLYCOSYDE HYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2MAN4Ligand/IonALPHA-D-MANNOSE
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:43 , ARG A:55 , NAG A:1300 , HOH A:2173 , HOH A:2524BINDING SITE FOR RESIDUE NAG A1299
2AC2SOFTWARETYR A:46 , NAG A:1299 , BMA A:1301 , MAN A:1305 , HOH A:2526 , HOH A:2527BINDING SITE FOR RESIDUE NAG A1300
3AC3SOFTWARENAG A:1300 , MAN A:1302 , HOH A:2527BINDING SITE FOR RESIDUE BMA A1301
4AC4SOFTWAREBMA A:1301 , MAN A:1303 , MAN A:1305 , HOH A:2170 , HOH A:2528BINDING SITE FOR RESIDUE MAN A1302
5AC5SOFTWAREMAN A:1302 , MAN A:1304 , HOH A:2009 , HOH A:2162 , HOH A:2514 , HOH A:2529 , HOH A:2530 , HOH A:2531 , HOH A:2532BINDING SITE FOR RESIDUE MAN A1303
6AC6SOFTWAREASN A:220 , ASN A:223 , MAN A:1303 , HOH A:2433 , HOH A:2533 , HOH A:2536 , HOH A:2538BINDING SITE FOR RESIDUE MAN A1304
7AC7SOFTWARESER A:48 , GLY A:49 , ASP A:50 , THR A:51 , NAG A:1300 , MAN A:1302 , HOH A:2156 , HOH A:2540BINDING SITE FOR RESIDUE MAN A1305

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:96 -A:269
2A:138 -A:236
3A:155 -A:165
4A:254 -A:273

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Trp A:110 -Pro A:111
2Ser A:126 -Pro A:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CL2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CL2)

(-) Exons   (0, 0)

(no "Exon" information available for 2CL2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:298
 aligned with Q874E3_PHACH | Q874E3 from UniProtKB/TrEMBL  Length:318

    Alignment length:298
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310        
         Q874E3_PHACH    21 ATYHLEDNWVGSAFLSTFTHEAIADPTHGRVNYVDQATALAKNLTYASGDTLILRADHTTTLSPSGPGRNSVRIRSIKTYTTHVAVFDVRHMPQGCGTWPAAWETDEGDWPNGGEVDIIEGVNDQSPNAMTLHTGANCAMPASRTMTGHATNNNCDVNTDGNTGCGVQAPTANSYGPSFNANGGGWYAMERTNSFIKVWFFPRNAGNVPNDIASGPATINTDNWGTPTAFFPNTNCDIGSHFDANNIIINLTFCGDWAGQASIFNGAGCPGSCVDYVNNNPSAFANAYWDIASVRVYQ 318
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeehhhhhhheeee.......eeeeee.hhhhhh..eeeee..eeeeeee.........eeeeeeeeeeeeeeeeeeeeeeeeee....eeeeeeeeeehhh...eeeeeeeeeee....eeeeeeeeeeeee.....eeeeeeeeeeee.ee.eeeeeeee..hhh.hhhhhh.eeeeeeeeee.eeeeeeeeee......hhhh...eeeehhh...eeeeeee.ee.hhhheeeeeeeeeeeeehhhh..hhhhhh......hhhhhhh.hhhh..eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cl2 A   1 ATYHLEDNWVGSAFLSTFTHEAIADPTHGRVNYVDQATALAKNLTYASGDTLILRADHTTTLSPSGPGRNSVRIRSIKTYTTHVAVFDVRHMPQGCGTWPAAWETDEGDWPNGGEVDIIEGVNDQSPNAMTLHTGANCAMPASRTMTGHATNNNCDVNTDGNTGCGVQAPTANSYGPSFNANGGGWYAMERTNSFIKVWFFPRNAGNVPNDIASGPATINTDNWGTPTAFFPNTNCDIGSHFDANNIIINLTFCGDWAGQASIFNGAGCPGSCVDYVNNNPSAFANAYWDIASVRVYQ 298
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2CL2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CL2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CL2)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q874E3_PHACH | Q874E3)
molecular function
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

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  Q874E3_PHACH | Q874E3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q874E3_PHACH | Q874E3: 2w39 2w52 2wlq 2wne

(-) Related Entries Specified in the PDB File

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