2CKK - JenaLib

Title :   HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN KIN17 C-TERMINAL DOMAIN CONTAINING A KOW MOTIF

Authors :   A. Le Maire, M. Schiltz, G. Pinon-Lataillade, E. Stura, J. Couprie, M. J. Angulo-Mora, S. Zinn-Justin

Date :   20 Apr 06 (Deposition) - 04 Oct 06 (Release) - 29 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym./Biol. Unit : A

Keywords :   Beta Barrel, Ribosomal Protein, Ribonucleoprotein, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Le Maire, M. Schiltz, E. A. Stura, G. Pinon-Lataillade, J. Couprie M. Moutiez, M. Gondry, J. F. Angulo, S. Zinn-Justin
A Tandem Of Sh3-Like Domains Participates In Rna Binding In Kin17, A Human Protein Activated In Response To Genotoxics.
J. Mol. Biol. V. 364 764 2006
PubMed-ID: 17045609 | Reference-DOI: 10.1016/J.JMB.2006.09.033

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 13)

Sites (11, 11)

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:55	BINDING SITE FOR RESIDUE IOD A 267
02	AC2	SOFTWARE	TRP A:14	BINDING SITE FOR RESIDUE IOD A 268
03	AC3	SOFTWARE	LYS A:34 , VAL A:42	BINDING SITE FOR RESIDUE IOD A 269
04	AC4	SOFTWARE	LYS A:125	BINDING SITE FOR RESIDUE IOD A 270
05	AC5	SOFTWARE	ILE A:38 , LYS A:40 , ACT A:378	BINDING SITE FOR RESIDUE IOD A 271
06	AC6	SOFTWARE	ALA A:72 , LYS A:125 , IOD A:276	BINDING SITE FOR RESIDUE IOD A 272
07	AC7	SOFTWARE	SER A:100 , THR A:102 , GLY A:117 , HOH A:2179	BINDING SITE FOR RESIDUE IOD A 274
08	AC8	SOFTWARE	HOH A:2125	BINDING SITE FOR RESIDUE IOD A 275
09	AC9	SOFTWARE	LYS A:125 , IOD A:272	BINDING SITE FOR RESIDUE IOD A 276
10	BC1	SOFTWARE	HOH A:2014	BINDING SITE FOR RESIDUE IOD A 277
11	BC2	SOFTWARE	ILE A:38 , THR A:64 , ALA A:127 , IOD A:271	BINDING SITE FOR RESIDUE ACT A 378

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (5, 5)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:120
 aligned with KIN17_HUMAN | O60870 from UniProtKB/Swiss-Prot  Length:393

    Alignment length:120
                                   283       293       303       313       323       333       343       353       363       373       383       393
          KIN17_HUMAN   274 TARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 393
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeee.....hhhhh..eeeeeeee...eeeeee.....eeeee...eee.......eeee........eeeeeeeehhh.eeeeee........eeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.9c Exon 1.10  PDB: A:18-40Exon 1.11  PDB: A:41-74           ---------------------------------Exon 1.14c           Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------Exon 1.13  PDB: A:74-107          -------------------- Transcript 1 (2)
                 2ckk A   8 TARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127
                                    17        27        37        47        57        67        77        87        97       107       117       127

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (KIN17_HUMAN | O60870)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003690	double-stranded DNA binding	Interacting selectively and non-covalently with double-stranded DNA.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006310	DNA recombination	Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0006397	mRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016363	nuclear matrix	The dense fibrillar network lying on the inner side of the nuclear membrane.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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