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(-) Description

Title :  GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE FROM THERMOSYNECHOCOCCUS ELONGATUS
 
Authors :  J. O. Schulze, W. -D. Schubert, J. Moser, D. Jahn, D. W. Heinz
Date :  17 Feb 06  (Deposition) - 29 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Tetrapyrrole Biosynthesis, Pyridoxal Phosphate Dependent, Aminotransferase, Isomerase, Porphyrin Biosynthesis, Chlorophyll Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. O. Schulze, W. -D. Schubert, J. Moser, D. Jahn, D. W. Heinz
Evolutionary Relationship Between Initial Enzymes Of Tetrapyrrole Biosynthesis
J. Mol. Biol. V. 358 1212 2006
PubMed-ID: 16564539  |  Reference-DOI: 10.1016/J.JMB.2006.02.064

(-) Compounds

Molecule 1 - GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
    ChainsA
    EC Number5.4.3.8
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPETM30
    Expression System StrainBL21
    Expression System Taxid511693
    Organism ScientificSYNECHOCOCCUS ELONGATUS
    Organism Taxid32046
    StrainBP-1
    SynonymGSA, GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE, GSA-AT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1PLR1Ligand/Ion(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYLDIHYDROGEN PHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PLR2Ligand/Ion(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYLDIHYDROGEN PHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:100 , GLY A:101 , THR A:102 , TYR A:128 , GLU A:190 , ASN A:195 , ASP A:223 , VAL A:225 , MET A:226 , LYS A:251 , HOH A:2013BINDING SITE FOR RESIDUE PLR A1412

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CFB)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:276 -Pro A:277
2Gly A:348 -Pro A:349

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CFB)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AA_TRANSFER_CLASS_3PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.GSA_THEEB246-282  1A:220-256
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1AA_TRANSFER_CLASS_3PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.GSA_THEEB246-282  2A:220-256

(-) Exons   (0, 0)

(no "Exon" information available for 2CFB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:360
 aligned with GSA_THEEB | Q8DLK8 from UniProtKB/Swiss-Prot  Length:437

    Alignment length:393
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434   
            GSA_THEEB    45 PIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIAYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCGGHISGMFGLFFTAGPVTNYEQAKQSDLKKFAAFHRGMLEQGIYLAPSQFEAGFTSLAHTEADIERTIAAARTVLSQL 437
               SCOP domains d2cfba1 A:19-411 Glutamate-1-semialdehyde aminomutase (aminotransferase)                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee..eeeeee.............hhhhhhhhhhhhh.........hhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh...eeeeee......----------------------------..eeeee...hhhhhhhhhhh...eeeeee...............hhhhhhhhhhhh..eeeeee...........hhhhhh....eeee.hhhhh....eeeee.hhhhh.......-----.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.....eeeee..eeeee.......hhhhhhh..hhhhhhhhhhhhhh.ee........eeee....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CLASS_3  PDB: A:220-256  ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfb A  19 PIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQREKVIKFEGCYHGH----------------------------AATLTAPYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIAYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGP-----TLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCGGHISGMFGLFFTAGPVTNYEQAKQSDLKKFAAFHRGMLEQGIYLAPSQFEAGFTSLAHTEADIERTIAAARTVLSQL 411
                                    28        38        48        58        68        78        88        98       108       118       128  |      -         -         - |     168       178       188       198       208       218       228       238       248       258       268        |-    |  288       298       308       318       328       338       348       358       368       378       388       398       408   
                                                                                                                                          131                          160                                                                                                                  277   283                                                                                                                                

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CFB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CFB)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A   (GSA_THEEB | Q8DLK8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0042286    glutamate-1-semialdehyde 2,1-aminomutase activity    Catalysis of the reaction: (S)-4-amino-5-oxopentanoate = 5-aminolevulinate.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
biological process
    GO:0015995    chlorophyll biosynthetic process    The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
    GO:0006779    porphyrin-containing compound biosynthetic process    The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
    GO:0006782    protoporphyrinogen IX biosynthetic process    The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.
    GO:0033014    tetrapyrrole biosynthetic process    The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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