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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 (CLPP1) FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  M. J. Mate, D. Portnoi, P. M. Alzari, M. Ortiz-Lombardia
Date :  10 Jan 06  (Deposition) - 11 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G
Keywords :  Serine Protease, Clp Protease, Proteolytic Subunit, Endopeptidase, Mycobacterium Tuberculosis, Atp-Dependent Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ingvarsson, M. J. Mate, M. Hogbom, D. Portnoi, N. Benaroudj, P. M. Alzari, M. Ortiz-Lombardia, T. Unge
Insights Into The Inter-Ring Plasticity Of Caseinolytic Proteases From The X-Ray Structure Of Mycobacterium Tuberculosis Clpp1.
Acta Crystallogr. , Sect. D V. 63 249 2007
PubMed-ID: 17242518  |  Reference-DOI: 10.1107/S0907444906050530

(-) Compounds

Molecule 1 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1
    Chains: A, B, C, D, E, F, G
    EC Number: 3.4.21.92
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: KOCH'S BACILLUS
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Other Details: INSTITUT PASTEUR COLLECTION
    Strain: H37RV
    Synonym: ENDOPEPTIDASE CLPP 1

 Structural Features

(-) Chains, Units

  1234567
Asymmetric/Biological Unit : ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2CBY)

(-) Sites  (0, 0)

(no "Site" information available for 2CBY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CBY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CBY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CBY)

(-) PROSITE Motifs  (1, 7)

Asymmetric/Biological Unit (1, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLP_PROTEASE_HISPS00382 Endopeptidase Clp histidine active site.CLPP1_MYCTO112-125
 
 
 
 
 
 		  7A:112-125
B:112-125
C:112-125
D:112-125
E:112-125
F:112-125
G:112-125
CLPP1_MYCTU112-125
 
 
 
 
 
 		  7A:112-125
B:112-125
C:112-125
D:112-125
E:112-125
F:112-125
G:112-125

(-) Exons   (0, 0)

(no "Exon" information available for 2CBY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
 aligned with CLPP1_MYCTO | P9WPC4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:179
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         
          CLPP1_MYCTO    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
               SCOP domains d2cbya1 A:15-193 Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2cbyA00 A:15-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby A  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184         
                                                                                                                                        125        136                                                         


Chain A from PDB  Type:PROTEIN  Length:169
 aligned with CLPP1_MYCTU | P9WPC5 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:179
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         
          CLPP1_MYCTU    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
               SCOP domains d2cbya1 A:15-193 Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2cbyA00 A:15-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby A  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184         
                                                                                                                                        125        136                                                         


Chain B from PDB  Type:PROTEIN  Length:170
 aligned with CLPP1_MYCTO | P9WPC4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:180
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
          CLPP1_MYCTO    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
               SCOP domains d2cbyb_ B: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2cbyB00 B:15-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cby B  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       194
                                                                                                                                        125        136                                                          


Chain B from PDB  Type:PROTEIN  Length:170
 aligned with CLPP1_MYCTU | P9WPC5 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:180
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
          CLPP1_MYCTU    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
               SCOP domains d2cbyb_ B: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2cbyB00 B:15-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cby B  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       194
                                                                                                                                        125        136                                                          


Chain C from PDB  Type:PROTEIN  Length:169
 aligned with CLPP1_MYCTO | P9WPC4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:179
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         
          CLPP1_MYCTO    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
               SCOP domains d2cbyc_ C: automated matches                                                                                                                                                        SCOP domains
               CATH domains 2cbyC00 C:15-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby C  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184         
                                                                                                                                        125        136                                                         


Chain C from PDB  Type:PROTEIN  Length:169
 aligned with CLPP1_MYCTU | P9WPC5 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:179
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         
          CLPP1_MYCTU    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
               SCOP domains d2cbyc_ C: automated matches                                                                                                                                                        SCOP domains
               CATH domains 2cbyC00 C:15-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby C  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184         
                                                                                                                                        125        136                                                         


Chain D from PDB  Type:PROTEIN  Length:171
 aligned with CLPP1_MYCTO | P9WPC4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:181
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 
          CLPP1_MYCTO    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHV 195
               SCOP domains d2cbyd_ D: automated matches                                                                                                                                                          SCOP domains
               CATH domains 2cbyD00 D:15-195 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eehhhhhhhhh...ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------CLP_PROTEASE_H---------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby D  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHV 195
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       194 
                                                                                                                                        125        136                                                           


Chain D from PDB  Type:PROTEIN  Length:171
 aligned with CLPP1_MYCTU | P9WPC5 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:181
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 
          CLPP1_MYCTU    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHV 195
               SCOP domains d2cbyd_ D: automated matches                                                                                                                                                          SCOP domains
               CATH domains 2cbyD00 D:15-195 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eehhhhhhhhh...ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------CLP_PROTEASE_H---------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby D  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHV 195
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       194 
                                                                                                                                        125        136                                                           


Chain E from PDB  Type:PROTEIN  Length:169
 aligned with CLPP1_MYCTO | P9WPC4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:179
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         
          CLPP1_MYCTO    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
               SCOP domains d2cbye_ E: automated matches                                                                                                                                                        SCOP domains
               CATH domains 2cbyE00 E:15-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby E  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184         
                                                                                                                                        125        136                                                         


Chain E from PDB  Type:PROTEIN  Length:169
 aligned with CLPP1_MYCTU | P9WPC5 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:179
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184         
          CLPP1_MYCTU    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
               SCOP domains d2cbye_ E: automated matches                                                                                                                                                        SCOP domains
               CATH domains 2cbyE00 E:15-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------CLP_PROTEASE_H-------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby E  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRA 193
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184         
                                                                                                                                        125        136                                                         


Chain F from PDB  Type:PROTEIN  Length:170
 aligned with CLPP1_MYCTO | P9WPC4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:180
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
          CLPP1_MYCTO    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
               SCOP domains d2cbyf_ F: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2cbyF00 F:15-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cby F  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       194
                                                                                                                                        125        136                                                          


Chain F from PDB  Type:PROTEIN  Length:170
 aligned with CLPP1_MYCTU | P9WPC5 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:180
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
          CLPP1_MYCTU    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
               SCOP domains d2cbyf_ F: automated matches                                                                                                                                                         SCOP domains
               CATH domains 2cbyF00 F:15-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2cby F  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       194
                                                                                                                                        125        136                                                          


Chain G from PDB  Type:PROTEIN  Length:167
 aligned with CLPP1_MYCTO | P9WPC4 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:177
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       
          CLPP1_MYCTO    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIIT 191
               SCOP domains d2cbyg_ G: automated matches                                                                                                                                                      SCOP domains
               CATH domains 2cbyG00 G:15-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby G  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIIT 191
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       
                                                                                                                                        125        136                                                       


Chain G from PDB  Type:PROTEIN  Length:167
 aligned with CLPP1_MYCTU | P9WPC5 from UniProtKB/Swiss-Prot  Length:200

    Alignment length:177
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       
          CLPP1_MYCTU    15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIIT 191
               SCOP domains d2cbyg_ G: automated matches                                                                                                                                                      SCOP domains
               CATH domains 2cbyG00 G:15-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee....----------hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeehhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cby G  15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP----------IAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIIT 191
                                    24        34        44        54        64        74        84        94       104       114       124|        - |     144       154       164       174       184       
                                                                                                                                        125        136
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 7)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 7)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CBY)

(-) Gene Ontology  (8, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (CLPP1_MYCTU | P9WPC5)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D,E,F,G   (CLPP1_MYCTO | P9WPC4)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3.4.21.92
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPP1_MYCTO | P9WPC4: 2c8t 2ce3 5dzk 5e0s
        CLPP1_MYCTU | P9WPC5: 2c8t 2ce3 4u0g 4u0h 5dzk 5e0s

(-) Related Entries Specified in the PDB File

2c8t THE 3.0 A RESOLUTION STRUCTURE OF CASEINOLYTIC CLP PROTEASE 1 FROM MYCOBACTERIUM TUBERCULOSIS