2BSI - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE TYPE III SECRETION CHAPERONE SYCT FROM YERSINIA ENTEROCOLITICA (CRYSTAL FORM 1)

Authors :   C. R. Buttner, G. R. Cornelis, D. W. Heinz, H. H. Niemann

Date :   21 May 05 (Deposition) - 26 Sep 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.01

Chains :   Asym./Biol. Unit : A,B

Keywords :   Type Iii Secretion, Yersinia, Chaperone, Effector, Yopt (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. R. Buttner, G. R. Cornelis, D. W. Heinz, H. H. Niemann
Crystal Structure Of Yersinia Enterocolitica Type Iii Secretion Chaperone Syct.
Protein Sci. V. 14 1993 2005
PubMed-ID: 16046625 | Reference-DOI: 10.1110/PS.051474605

Molecule 1 - YOPT CHAPERONE SYCT
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-M-30
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	YERSINIA ENTEROCOLITICA
	Organism Taxid	:	630
	Other Details	:	YERSINIA ENTEROCOLITICA VIRULENCE PLASMID PYVE227
	Strain	:	W22703
	Variant	:	SEROTYPE O:9

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 6)

No.	Name	Count	Type	Full Name
1	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2BSI)

(no "SS Bond" information available for 2BSI)

Asymmetric/Biological Unit

No.	Residues
1	Mse A:0	-	Gly A:1
2	Trp A:69	-	Pro A:70
3	Lys A:112	-	Glu A:113
4	Trp B:69	-	Pro B:70

Asymmetric/Biological Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_SYCT_YEREN_001 *	S	81	P	SYCT_YEREN	---	---	A/B	S	81	P
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2BSI)

(no "Exon" information available for 2BSI)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:114
 aligned with SYCT_YERE8 | A1JU66 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:114
                            1 2                                                                                                               
                            | |      9        19        29        39        49        59        69        79        89        99       109    
           SYCT_YERE8     1 M-QTTFTELMQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKPILWSQQSLVGLDIDEMQAWLERFIDDIEQRKE 113
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh....eee...eeeee.....eeeeeee...eeeeeeeee................eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------P-------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2bsi A   0 mGQTTFTELmQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEmQAWLERFIDDIEQRKE 113
                            |        9        19        29        39        49        59        69        79        89       |99       109    
                            |        9-MSE                                                                                  97-MSE            
                            0-MSE

Chain A from PDB  Type:PROTEIN  Length:114
 aligned with SYCT_YEREN | P0C2V9 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:114
                            1 2                                                                                                               
                            | |      9        19        29        39        49        59        69        79        89        99       109    
           SYCT_YEREN     1 M-QTTFTELMQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEMQAWLERFIDDIEQRKE 113
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh....eee...eeeee.....eeeeeee...eeeeeeeee................eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------P-------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2bsi A   0 mGQTTFTELmQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEmQAWLERFIDDIEQRKE 113
                            |        9        19        29        39        49        59        69        79        89       |99       109    
                            0-MSE    9-MSE                                                                                  97-MSE

Chain B from PDB  Type:PROTEIN  Length:114
 aligned with SYCT_YERE8 | A1JU66 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:114
                            1 2                                                                                                               
                            | |      9        19        29        39        49        59        69        79        89        99       109    
           SYCT_YERE8     1 M-QTTFTELMQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKPILWSQQSLVGLDIDEMQAWLERFIDDIEQRKE 113
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...eeee...eeeeee...eeeeeeee...eeeeeeeee................eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------P-------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2bsi B   0 mGQTTFTELmQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEmQAWLERFIDDIEQRKE 113
                            |        9        19        29        39        49        59        69        79        89       |99       109    
                            0-MSE    9-MSE                                                                                  97-MSE

Chain B from PDB  Type:PROTEIN  Length:114
 aligned with SYCT_YEREN | P0C2V9 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:114
                            1 2                                                                                                               
                            | |      9        19        29        39        49        59        69        79        89        99       109    
           SYCT_YEREN     1 M-QTTFTELMQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEMQAWLERFIDDIEQRKE 113
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...eeee...eeeeee...eeeeeeee...eeeeeeeee................eeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------P-------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2bsi B   0 mGQTTFTELmQQLFLKLGLNHQVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEmQAWLERFIDDIEQRKE 113
                            |        9        19        29        39        49        59        69        79        89       |99       109    
                            0-MSE    9-MSE                                                                                  97-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2BSI)

(no "CATH Domain" information available for 2BSI)

(no "Pfam Domain" information available for 2BSI)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (SYCT_YEREN | P0C2V9)

biological process
	GO:0050708	regulation of protein secretion	Any process that modulates the frequency, rate or extent of the controlled release of a protein from a cell.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B (SYCT_YERE8 | A1JU66)

biological process
	GO:0050708	regulation of protein secretion	Any process that modulates the frequency, rate or extent of the controlled release of a protein from a cell.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 2bsi)

	Cis Peptide Bonds
		Lys A:112 - Glu A:113	[ RasMol ]
		Mse A:0 - Gly A:1	[ RasMol ]
		Trp A:69 - Pro A:70	[ RasMol ]
		Trp B:69 - Pro B:70	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2bsi
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	SYCT_YERE8 \| A1JU66
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	SYCT_YEREN \| P0C2V9
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	SYCT_YERE8 \| A1JU66
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	SYCT_YEREN \| P0C2V9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	SYCT_YERE8 \| A1JU66	:	2bho 2bsh 2bsj
	SYCT_YEREN \| P0C2V9	:	2bho 2bsh 2bsj

2bho	CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION CHAPERONE SYCT
2bsh	CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION CHAPERONE SYCT (CRYSTAL FORM 2)
2bsj	NATIVE CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION CHAPERONE SYCT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 4)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File