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(-) Description

Title :  THE STRUCTURE OF THE N-TERMINAL DOMAIN OF RSBR
 
Authors :  J. W. Murray, O. Delumeau, R. J. Lewis
Date :  28 Mar 05  (Deposition) - 03 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Stress-Response, Stress Response, Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Murray, O. Delumeau, R. J. Lewis
Structure Of A Nonheme Globin In Environmental Stress Signaling.
Proc. Natl. Acad. Sci. Usa V. 102 17320 2005
PubMed-ID: 16301540  |  Reference-DOI: 10.1073/PNAS.0506599102

(-) Compounds

Molecule 1 - MODULATOR PROTEIN RSBR
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: B834
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN, RESIDUES 1-136
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric Unit (2, 15)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2NA3Ligand/IonSODIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2NA-1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:65 , HOH B:2079 , HOH B:2081 , HOH B:2083 , HOH C:2022 , HOH C:2049BINDING SITE FOR RESIDUE NA B1137
2AC2SOFTWARESER C:65 , HOH C:2070 , HOH C:2075 , HOH C:2076 , HOH E:2018 , HOH E:2043BINDING SITE FOR RESIDUE NA C1137
3AC3SOFTWAREHOH B:2052 , SER F:65 , GLN F:66 , HOH F:2032 , HOH F:2083 , HOH F:2088 , HOH F:2089BINDING SITE FOR RESIDUE NA F1137

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BNL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BNL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BNL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BNL)

(-) Exons   (0, 0)

(no "Exon" information available for 2BNL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with RSBRA_BACSU | P42409 from UniProtKB/Swiss-Prot  Length:274

    Alignment length:134
                                    12        22        32        42        52        62        72        82        92       102       112       122       132    
          RSBRA_BACSU     3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDKRLPDQESTELIWQIDRFFSPINTEIFNQYSISWE 136
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnl A   3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSmKFLATALAEFWKRLYTKmNDK-----ESTELIWQIDRFFSPINTEIFNQYSISWE 136
                                    12        22        32        42        52        62        72        82        92      |102     | 112       122       132    
                                                                                                         81-MSE            99-MSE  108                            
                                                                                                                             102                                  


Chain B from PDB  Type:PROTEIN  Length:128
 aligned with RSBRA_BACSU | P42409 from UniProtKB/Swiss-Prot  Length:274

    Alignment length:134
                                    12        22        32        42        52        62        72        82        92       102       112       122       132    
          RSBRA_BACSU     3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDKRLPDQESTELIWQIDRFFSPINTEIFNQYSISWE 136
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnl B   3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSmKFLATALAEFWKRLYTKmND------ESTELIWQIDRFFSPINTEIFNQYSISWE 136
                                    12        22        32        42        52        62        72        82        92      | |-     | 112       122       132    
                                                                                                         81-MSE            99-MSE  108                            
                                                                                                                            101                                   


Chain C from PDB  Type:PROTEIN  Length:134
 aligned with RSBRA_BACSU | P42409 from UniProtKB/Swiss-Prot  Length:274

    Alignment length:134
                                    12        22        32        42        52        62        72        82        92       102       112       122       132    
          RSBRA_BACSU     3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDKRLPDQESTELIWQIDRFFSPINTEIFNQYSISWE 136
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnl C   3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSmKFLATALAEFWKRLYTKmNDKRLPDQESTELIWQIDRFFSPINTEIFNQYSISWE 136
                                    12        22        32        42        52        62        72        82        92      |102       112       122       132    
                                                                                                         81-MSE            99-MSE                                 


Chain D from PDB  Type:PROTEIN  Length:129
 aligned with RSBRA_BACSU | P42409 from UniProtKB/Swiss-Prot  Length:274

    Alignment length:134
                                    12        22        32        42        52        62        72        82        92       102       112       122       132    
          RSBRA_BACSU     3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDKRLPDQESTELIWQIDRFFSPINTEIFNQYSISWE 136
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnl D   3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSmKFLATALAEFWKRLYTKmNDK-----ESTELIWQIDRFFSPINTEIFNQYSISWE 136
                                    12        22        32        42        52        62        72        82        92      |102     | 112       122       132    
                                                                                                         81-MSE            99-MSE  108                            
                                                                                                                             102                                  


Chain E from PDB  Type:PROTEIN  Length:129
 aligned with RSBRA_BACSU | P42409 from UniProtKB/Swiss-Prot  Length:274

    Alignment length:134
                                    12        22        32        42        52        62        72        82        92       102       112       122       132    
          RSBRA_BACSU     3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDKRLPDQESTELIWQIDRFFSPINTEIFNQYSISWE 136
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnl E   3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSmKFLATALAEFWKRLYTKmNDK-----ESTELIWQIDRFFSPINTEIFNQYSISWE 136
                                    12        22        32        42        52        62        72        82        92      |102     | 112       122       132    
                                                                                                         81-MSE            99-MSE  108                            
                                                                                                                             102                                  


Chain F from PDB  Type:PROTEIN  Length:129
 aligned with RSBRA_BACSU | P42409 from UniProtKB/Swiss-Prot  Length:274

    Alignment length:134
                                    12        22        32        42        52        62        72        82        92       102       112       122       132    
          RSBRA_BACSU     3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSMKFLATALAEFWKRLYTKMNDKRLPDQESTELIWQIDRFFSPINTEIFNQYSISWE 136
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bnl F   3 SNQTVYQFIAENQNELLQLWTDTLKELSEQESYQLTDQVYENISKEYIDILLLSVKDENAAESQISELALRAVQIGLSmKFLATALAEFWKRLYTKmNDK-----ESTELIWQIDRFFSPINTEIFNQYSISWE 136
                                    12        22        32        42        52        62        72        82        92      |102     | 112       122       132    
                                                                                                         81-MSE            99-MSE  108                            
                                                                                                                             102
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2BNL)

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