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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM GLUTAMATE DEHYDROGENASE, A PUTATIVE TARGET FOR NOVEL ANTIMALARIAL DRUGS
 
Authors :  C. Werner, M. T. Stubbs, R. L. Krauth-Siege, G. Klebe
Date :  10 Mar 05  (Deposition) - 19 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Plasmodium Falciparum, Malaria, Glutamate Dehydrogenase, Drug Design, Crystal Structure Analysis, Oligomer Organization, Nadp, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Werner, M. T. Stubbs, R. L. Krauth-Siege, G. Klebe
The Crystal Structure Of Plasmodium Falciparum Glutamate Dehydrogenase, A Putative Target For Novel Antimalarial Drugs
J. Mol. Biol. V. 349 597 2005
PubMed-ID: 15878595  |  Reference-DOI: 10.1016/J.JMB.2005.03.077

(-) Compounds

Molecule 1 - GLUTAMATE DEHYDROGENASE (NADP+)
    Chains: A, B, C, D, E, F
    EC Number: 1.4.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BMA)

(-) Sites  (0, 0)

(no "Site" information available for 2BMA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BMA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BMA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BMA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BMA)

(-) Exons   (0, 0)

(no "Exon" information available for 2BMA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:467
 aligned with O96940_PLAFA | O96940 from UniProtKB/TrEMBL  Length:470

    Alignment length:467
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       
        O96940_PLAFA      4 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNEINLEDAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  470
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee.....eeeeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhh...hhhh.eeeee..hhhhhhhhhhhhhh..ee.eeee..eeee.....hhhhhhhhhhhhh....hhhhhhhh....ee............eeee........hhhhhhhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2bma A  -22 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  448
                                   -13        -3 ||      8        18        28        38   ||   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361|      372       382       392       402       412     | 421       431       441       
                                                -1|                                       42|                                                                                                                                                  194|                                                                                                                                                                  361|                                                   417A                               
                                                  1                                        45                                                                                                                                                   196                                                                                                                                                                   363                                                                                      


Chain B from PDB  Type:PROTEIN  Length:467
 aligned with O96940_PLAFA | O96940 from UniProtKB/TrEMBL  Length:470

    Alignment length:467
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       
        O96940_PLAFA      4 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNEINLEDAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  470
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee.....eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhhh..hhhh.eeeee..hhhhhhhhhhhhhh..ee.eeee..eeee.....hhhhhhhhhh.......hhhhhhhh....eeee..hhhhh...eeee.......hhhhhhhhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2bma B  -22 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  448
                                   -13        -3 ||      8        18        28        38   ||   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361|      372       382       392       402       412     | 421       431       441       
                                                -1|                                       42|                                                                                                                                                  194|                                                                                                                                                                  361|                                                   417A                               
                                                  1                                        45                                                                                                                                                   196                                                                                                                                                                   363                                                                                      


Chain C from PDB  Type:PROTEIN  Length:467
 aligned with O96940_PLAFA | O96940 from UniProtKB/TrEMBL  Length:470

    Alignment length:467
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       
        O96940_PLAFA      4 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNEINLEDAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  470
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee.....eeeeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhh...hhhh.eeeee..hhhhhhhhhhhhhh..ee.eeee..eeee.....hhhhhhhhhhhhh....hhhhhhhh....ee............eeee........hhhhhhhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2bma C  -22 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  448
                                   -13        -3 ||      8        18        28        38   ||   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361|      372       382       392       402       412     | 421       431       441       
                                                -1|                                       42|                                                                                                                                                  194|                                                                                                                                                                  361|                                                   417A                               
                                                  1                                        45                                                                                                                                                   196                                                                                                                                                                   363                                                                                      


Chain D from PDB  Type:PROTEIN  Length:467
 aligned with O96940_PLAFA | O96940 from UniProtKB/TrEMBL  Length:470

    Alignment length:467
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       
        O96940_PLAFA      4 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNEINLEDAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  470
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee.....eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhhh..hhhh.eeeee..hhhhhhhhhhhhhh..ee.eeee..eeee.....hhhhhhhhhh.......hhhhhhhh....eeee..hhhhh...eeee.......hhhhhhhhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2bma D  -22 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  448
                                   -13        -3 ||      8        18        28        38   ||   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361|      372       382       392       402       412     | 421       431       441       
                                                -1|                                       42|                                                                                                                                                  194|                                                                                                                                                                  361|                                                   417A                               
                                                  1                                        45                                                                                                                                                   196                                                                                                                                                                   363                                                                                      


Chain E from PDB  Type:PROTEIN  Length:467
 aligned with O96940_PLAFA | O96940 from UniProtKB/TrEMBL  Length:470

    Alignment length:467
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       
        O96940_PLAFA      4 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNEINLEDAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  470
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee.....eeeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhhh..hhhh.eeeee..hhhhhhhhhhhhhh..ee.eeee..eeee.....hhhhhhhhhh.......hhhhhhhh....eeee..hhhhh...eeee.......hhhhhhhhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2bma E  -22 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  448
                                   -13        -3 ||      8        18        28        38   ||   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361|      372       382       392       402       412     | 421       431       441       
                                                -1|                                       42|                                                                                                                                                  194|                                                                                                                                                                  361|                                                   417A                               
                                                  1                                        45                                                                                                                                                   196                                                                                                                                                                   363                                                                                      


Chain F from PDB  Type:PROTEIN  Length:467
 aligned with O96940_PLAFA | O96940 from UniProtKB/TrEMBL  Length:470

    Alignment length:467
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       
        O96940_PLAFA      4 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNEINLEDAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  470
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeeeeeee.....eeeeeeeeeeee.....eeeeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhh...hhhh.eeeee..hhhhhhhhhhhhhh..ee.eeee..eeee.....hhhhhhhhhhhhh....hhhhhhhh....ee............eeee........hhhhhhhhhh...eee.......hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2bma F  -22 LKDKTGRFVVLDKNASNYESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGCF  448
                                   -13        -3 ||      8        18        28        38   ||   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361|      372       382       392       402       412     | 421       431       441       
                                                -1|                                       42|                                                                                                                                                  194|                                                                                                                                                                  361|                                                   417A                               
                                                  1                                        45                                                                                                                                                   196                                                                                                                                                                   363
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2BMA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2BMA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BMA)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (O96940_PLAFA | O96940)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016639    oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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