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(-) Description

Title :  B116 OF SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS (STIV)
 
Authors :  E. T. Larson, D. Reiter, M. J. Young, C. M. Lawrence
Date :  19 Oct 06  (Deposition) - 02 Nov 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Viral Protein, Archaeal Virus, Crenarchaeal Virus, B116, Stiv, Archaea, Sulfolobus, Crenarchaea, Sulfolobus Turreted Icosahedral Virus, Hypothetical Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. T. Larson, B. J. Eilers, D. Reiter, A. C. Ortmann, M. J. Young, C. M. Lawrence
A New Dna Binding Protein Highly Conserved In Diverse Crenarchaeal Viruses
Virology V. 363 387 2007
PubMed-ID: 17336360  |  Reference-DOI: 10.1016/J.VIROL.2007.01.027

(-) Compounds

Molecule 1 - STIV B116
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEXP14-STIVB116
    Expression System Strain: B834(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector: PDEST14
    Organism Common: STIV
    Organism Scientific: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS
    Organism Taxid: 269145
    Other Details: STIV WAS ISOLATED FROM SULFOLOBUS SPECIES IN ACIDIC HOT SPRINGS (PH 2.9-3.9, 72-92 DEGREES C) IN THE RABBIT CREEK THERMAL AREA WITHIN MIDWAY GEYSER BASIN INYELLOWSTONE NATIONAL PARK (RICE, ET AL. PNAS. MAY 18, 2004 VOL. 101 NO. 20. PP. 7716-7720.)
    Strain: ISOLATE YNPRC179

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2J85)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:33 -A:62
2B:33 -B:62

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:18 -Pro A:19
2Phe B:18 -Pro B:19

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2J85)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2J85)

(-) Exons   (0, 0)

(no "Exon" information available for 2J85)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
 aligned with Q6Q0K9_9VIRU | Q6Q0K9 from UniProtKB/TrEMBL  Length:116

    Alignment length:118
                                                                                                                                            116   
                                    11        21        31        41        51        61        71        81        91       101       111    |   
         Q6Q0K9_9VIRU     2 GKVFLTNAFSINMLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKMNEGDEALIIMISQRLEEGKVLSDKEIKDMYRQGKISFYEVW---   -
               SCOP domains d2j85a1 A:2-116 Hypothetical protein B116                                                                          --- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh................eeeeeee..........hhhhhhhhhhh..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2j85 A   2 GKVFLTNAFSINmLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKmNEGDEALIImISQRLEEGKVLSDKEIKDmYRQGKISFYEVWHHH 119
                                    11  |     21        31        41        51        61        71   |    81   |    91       101  |    111        
                                       14-MSE                                                       75-MSE    85-MSE            104-MSE           


Chain B from PDB  Type:PROTEIN  Length:117
 aligned with Q6Q0K9_9VIRU | Q6Q0K9 from UniProtKB/TrEMBL  Length:116

    Alignment length:117
                                                                                                                                            116  
                                    11        21        31        41        51        61        71        81        91       101       111    |  
         Q6Q0K9_9VIRU     2 GKVFLTNAFSINMLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKMNEGDEALIIMISQRLEEGKVLSDKEIKDMYRQGKISFYEVW--   -
               SCOP domains d2j85b_ B: automated matches                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh................eeeeeee..........hhhhhhhhhhh..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 2j85 B   2 GKVFLTNAFSINmLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQLQKNRVEVKmNEGDEALIImISQRLEEGKVLSDKEIKDmYRQGKISFYEVWHH 118
                                    11  |     21        31        41        51        61        71   |    81   |    91       101  |    111       
                                       14-MSE                                                       75-MSE    85-MSE            104-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2J85)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2J85)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2J85)

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