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(-) Description

Title :  THE MACRO DOMAIN IS AN ADP-RIBOSE BINDING MODULE
 
Authors :  G. I. Karras, H. R. Buhecha, M. D. Allen, C. Pugieux, F. Sait, M. Bycroft, A. G. Ladurner
Date :  10 Dec 04  (Deposition) - 16 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Histone Macroh2A, Crystal Structure P-Loop, Nucleotide, Hydrolase, Macro_h2A Domain/Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. I. Karras, G. Kustatscher, H. R. Buhecha, M. D. Allen, C. Pugieux, F. Sait, M. Bycroft, A. G. Ladurner
The Macro Domain Is An Adp-Ribose Binding Module.
Embo J. V. 24 1911 2005
PubMed-ID: 15902274  |  Reference-DOI: 10.1038/SJ.EMBOJ.7600664

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN AF1521
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: C41
    Expression System Plasmid: PBE
    Expression System Taxid: 562
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2FME1Mod. Amino AcidN-FORMYLMETHIONINE
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:77BINDING SITE FOR RESIDUE MG A1194
2AC2SOFTWAREASP A:20 , ILE A:21 , ALA A:32 , GLY A:42 , VAL A:43 , ALA A:46 , ALA A:139 , SER A:141 , GLY A:143 , ILE A:144 , TYR A:145 , TYR A:176 , HOH A:2039BINDING SITE FOR RESIDUE ADP A1193

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:104 -A:147

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BFR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BFR)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MACROPS51154 Macro domain profile.Y1521_ARCFU1-192  1A:1-192

(-) Exons   (0, 0)

(no "Exon" information available for 2BFR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
 aligned with Y1521_ARCFU | O28751 from UniProtKB/Swiss-Prot  Length:192

    Alignment length:192
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190  
          Y1521_ARCFU     1 MEVLFEAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERSL 192
               SCOP domains d2bfra_ A: Hypothetical protein AF1521                                                                                                                                                           SCOP domains
               CATH domains -2bfrA00 A:2-192 Leucine Aminopeptidase, subunit E, domain 1                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..eeeeeee.hhhhh...eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee.hhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh..eeee..........hhhhhhhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE MACRO  PDB: A:1-192 UniProt: 1-192                                                                                                                                                               PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bfr A   1 mEVLFEAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERSL 192
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190  
                            |                                                                                                                                                                                               
                            1-FME
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BFR)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Y1521_ARCFU | O28751)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y1521_ARCFU | O28751: 1hjz 1vhu 2bfq

(-) Related Entries Specified in the PDB File

1hjz CRYSTAL STRUCTURE OF AF1521 PROTEIN CONTAINING A MACROH2A DOMAIN
1vhu CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOESTERASE
2bfq CRYSTAL STRUCTURE OF A MACROH2A DOMAIN