2BCM - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   DAAE ADHESIN

Authors :   I. Le Trong, R. E. Stenkamp, N. Korotkova, S. Moseley

Date :   19 Oct 05 (Deposition) - 01 Nov 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.48

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Daae Adhesin, Donor Strand Complementation, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Korotkova, I. Le Trong, R. Samudrala, K. Korotkov, C. P. Van Loy, A. L. Bui, S. L. Moseley, R. E. Stenkamp
Crystal Structure And Mutational Analysis Of The Daae Adhesin Of Escherichia Coli.
J. Biol. Chem. V. 281 22367 2006
PubMed-ID: 16751628 | Reference-DOI: 10.1074/JBC.M604646200

Molecule 1 - F1845 FIMBRIAL PROTEIN
	Chains	:	B, A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	DAAE-DSC
	Gene	:	DAAE
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	N-TERMINAL RESIDUES ADDED AT C-TERMINUS AND THEN FOLLOWED BY LINKER AND HIS-TAG
	Synonym	:	FIMBRIAL ADHESIN F1845 ANTIGEN

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2BCM)

(no "Site" information available for 2BCM)

Asymmetric/Biological Unit

No.	Residues
1	A:51	-	C:19
2	B:19	-	C:51
3	B:51	-	A:19

(no "Cis Peptide Bond" information available for 2BCM)

(no "SAP(SNP)/Variant" information available for 2BCM)

(no "PROSITE Motif" information available for 2BCM)

(no "Exon" information available for 2BCM)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:138
 aligned with DAAE_ECOLX | P13719 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:138
                                    31        41        51        61        71        81        91       101       111       121       131       141       151        
           DAAE_ECOLX    22 TFQASGTTGITTLTVTEECRVQVGNVTATLARSKLKDDTAIGVIGVTALGCNGLQAALQADPDNYDATNLYMTSRNHDKLNVKLKATDGSSWTYGNGVFYKTEGGNWGGHVGISVDGNQTDKPTGEYTLNLTGGYWTN 159
               SCOP domains d2bcma_ A: automated matches                                                                                                               SCOP domains
               CATH domains 2bcmA00 A:1-139 Afimbrial adhesin afa-iii.                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee...eeee.....eee.hhh....eeeeeeeeee.....eeeeee.hhhh....eeeee....eeeeeeee.....eeee..eeee.....eeeeeeeee.........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bcm A   1 TFQASGTTGITTLTVTEECRVQVGNVTATLARSKLKDDTAIGVIGVTALGCNGLQAALQADPDNYDATNLYMTSRNHDKLNVKLKATDGSSWTYGNGVFYKTEGGNWGGHVGISVDGNQTDKPTGEYTLNLTGGYWTN 139
                                    10        20        30        40        50        60        70      ||81        91       101       111       121       131        
                                                                                                       77|                                                            
                                                                                                        79

Chain B from PDB  Type:PROTEIN  Length:138
 aligned with DAAE_ECOLX | P13719 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:138
                                    31        41        51        61        71        81        91       101       111       121       131       141       151        
           DAAE_ECOLX    22 TFQASGTTGITTLTVTEECRVQVGNVTATLARSKLKDDTAIGVIGVTALGCNGLQAALQADPDNYDATNLYMTSRNHDKLNVKLKATDGSSWTYGNGVFYKTEGGNWGGHVGISVDGNQTDKPTGEYTLNLTGGYWTN 159
               SCOP domains d2bcmb_ B: automated matches                                                                                                               SCOP domains
               CATH domains 2bcmB00 B:1-139 Afimbrial adhesin afa-iii.                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee...eeee.....eee.hhh....eeeeeeeeee.....eeeeee.hhhh....eeee.....eeeeeeee.....eeee..eeee.....eeeeeeeee.........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2bcm B   1 TFQASGTTGITTLTVTEECRVQVGNVTATLARSKLKDDTAIGVIGVTALGCNGLQAALQADPDNYDATNLYMTSRNHDKLNVKLKATDGSSWTYGNGVFYKTEGGNWGGHVGISVDGNQTDKPTGEYTLNLTGGYWTN 139
                                    10        20        30        40        50        60        70      ||81        91       101       111       121       131        
                                                                                                       77|                                                            
                                                                                                        79

Chain C from PDB  Type:PROTEIN  Length:137
 aligned with DAAE_ECOLX | P13719 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:137
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       
           DAAE_ECOLX    22 TFQASGTTGITTLTVTEECRVQVGNVTATLARSKLKDDTAIGVIGVTALGCNGLQAALQADPDNYDATNLYMTSRNHDKLNVKLKATDGSSWTYGNGVFYKTEGGNWGGHVGISVDGNQTDKPTGEYTLNLTGGYWT 158
               SCOP domains d2bcmc_ C: automated matches                                                                                                              SCOP domains
               CATH domains 2bcmC00 C:1-138 Afimbrial adhesin afa-iii.                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee...eeee....eeee.hhh....eeeeeeeeee.....eeeeee.hhhh....eeeee....eeeeeeee.....eeee..eeee.....eeeeeeeee.........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bcm C   1 TFQASGTTGITTLTVTEECRVQVGNVTATLARSKLKDDTAIGVIGVTALGCNGLQAALQADPDNYDATNLYMTSRNHDKLNVKLKATDGSSWTYGNGVFYKTEGGNWGGHVGISVDGNQTDKPTGEYTLNLTGGYWT 138
                                    10        20        30        40        50        60        70      ||81        91       101       111       121       131       
                                                                                                       77|                                                           
                                                                                                        79

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: automated matches (2)

Protein domain: automated matches (2)

Escherichia coli [TaxId: 562] (1)

1a	d2bcma_	A:
1b	d2bcmb_	B:
1c	d2bcmc_	C:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Afimbrial adhesin afa-iii. (12)

Escherichia coli. Organism_taxid: 562. (2)

1a	2bcmA00	A:1-139
1b	2bcmB00	B:1-139
1c	2bcmC00	C:1-138

(no "Pfam Domain" information available for 2BCM)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (DAAE_ECOLX | P13719)

cellular component
	GO:0009289		pilus		A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Asymmetric/Biological Unit
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Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (3, 3)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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