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(-) Description

Title :  PLASMODIUM YOELII CYCLOPHILIN-LIKE PROTEIN
 
Authors :  A. Dong, P. Finerty, G. Wasney, M. Vedadi, J. Lew, Y. Zhao, I. Kozieradzki, M. Melone, Z. Alam, A. M. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, A. Bochkarev, R. Hui, T. Hills, Structural Genomics Consortium (Sgc)
Date :  03 Oct 05  (Deposition) - 11 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Cyclophilin, Structural Genomics, Structural Genomics Consortium, Sgc, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
PubMed-ID: 17125854  |  Reference-DOI: 10.1016/J.MOLBIOPARA.2006.10.011
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CYCLOPHILIN-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P28-LIC-THROMBIN DERIVED FROM PET28
    Expression System Strain: BL21 CODON PLUS RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PLASMODIUM YOELII
    Organism Taxid: 5861

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1CL5Ligand/IonCHLORIDE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:35 , TRP A:56 , TYR A:57 , CL A:1003 , HOH A:1006 , HOH A:1023BINDING SITE FOR RESIDUE CL A 1000
2AC2SOFTWAREALA A:122 , PRO A:145BINDING SITE FOR RESIDUE CL A 1001
3AC3SOFTWAREPRO A:85 , ASN A:86BINDING SITE FOR RESIDUE CL A 1002
4AC4SOFTWARELYS A:31 , MET A:32 , GLY A:34 , HIS A:35 , TRP A:56 , ARG A:82 , CL A:1000BINDING SITE FOR RESIDUE CL A 1003
5AC5SOFTWARELYS A:33 , ARG A:82 , GLN A:90 , SER A:128BINDING SITE FOR RESIDUE CL A 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2B71)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2B71)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2B71)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2B71)

(-) Exons   (0, 0)

(no "Exon" information available for 2B71)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
 aligned with Q7RRM6_PLAYO | Q7RRM6 from UniProtKB/TrEMBL  Length:202

    Alignment length:169
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188         
         Q7RRM6_PLAYO    29 LEEKIAYYKMKGHTERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTST 197
               SCOP domains d2b71a1 A:23-191 Cyclophilin-like protein PY00693                                                                                                                         SCOP domains
               CATH domains 2b71A00 A:23-191 Cyclophilin                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeee..eeeeeee....hhhhhhhhhhhhhh.....eeeeeee...eeee................................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhh.............eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2b71 A  23 LEEKIAYYKMKGHTERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTST 191
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2B71)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q7RRM6_PLAYO | Q7RRM6)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.

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  2b71
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