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(-) Description

Title :  HYPOTHETICAL PROTEIN FROM LEISHMANIA MAJOR
 
Authors :  M. A. Holmes, E. A. Merritt, Structural Genomics Of Pathogenic Protozoa Consortium (Sgpp)
Date :  26 Sep 05  (Deposition) - 04 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Structural Genomics Of Pathogenic Protozoa Consortium, Sgpp, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Holmes, E. A. Merritt, Structural Genomics Of Pathogenic Protozoa Consortium (Sgpp)
Hypothetical Protein From Leishmania Major
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN, CONSERVED
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BG1861
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LMJF10.1260
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2B4W)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2B4W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2B4W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2B4W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2B4W)

(-) Exons   (0, 0)

(no "Exon" information available for 2B4W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
 aligned with Q4QH86_LEIMA | Q4QH86 from UniProtKB/TrEMBL  Length:315

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
         Q4QH86_LEIMA     2 KQVKAAFEANKRVYESVLLTFKGVDGYDVYNCSVPFSYKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVPELSWELEDPYIAKINNEMIFGGTRVRKNGNAILSYYGYFYRGTPDELTYFTRGPGCMKDIRVLQLQDGRLGVFSRPRVGRKASIGFVILNSIDELGAEVIAKAPPLDILSENAWGGVNQAYLLSSGKVGCIGHYSYEDTNEKQQPQSVYVNYAFVLDPQSRAITGAKIIGTKSCYPPCEPKVPLLADCVFASGIVMRSDGKVDLYSGVGDSHEGRITIDYPFKGHGTIIGDLHFPM 311
               SCOP domains d2b4wa1 A:2-311 Hypothetical protein LmjF10.1260                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeee.eee.....eee.....eee..eeeeeeeee........eeeeeeeee..eeee........eeeeeeee..eeeeeeeeee-----..eeeeeeeeee..eeeeeee........eeee.....eeeee....---..eeeeee.hhhhhhhhhhhh..ee...--.eeeeeeeeeee....eeeeeeeee.--------..eeeeeeeee......eeeeeeeehhhhh......hhhhh..eeeeeeee.....eeeeeee...eeeeeee.........ee...ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2b4w A   2 KQVKAAFEANKRVYESVLLTFKGVDGYDVYNCSVPFSYKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVPELSWELEDPYIAKINNEmIFGGTRVR-----ILSYYGYFYRGTPDELTYFTRGPGCmKDIRVLQLQDGRLGVFSRPRV---ASIGFVILNSIDELGAEVIAKAPPLDIL--NAWGGVNQAYLLSSGKVGCIGHYSYE--------QSVYVNYAFVLDPQSRAITGAKIIGTKSCYPPCEPKVPLLADCVFASGIVmRSDGKVDLYSGVGDSHEGRITIDYPFKGHGTIIGDLHFPm 311
                                    11        21        31        41        51        61        71        81        91 |     101     | 111       121       131|      141       151 |   | 161       171       181  |  | 191       201       211|      221       231       241       251       261       271       281       291       301       311
                                                                                                                      93-MSE 101   107                      132-MSE              153 157                        184  |                      212      221                                               271-MSE                                 311-MSE
                                                                                                                                                                                                                   187
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2B4W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2B4W)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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