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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE UBIQUITIN-CONJUGATING ENZYME E2 FROM TOXOPLASMA GONDII
 
Authors :  W. Tempel, A. Dong, Y. Zhao, J. Lew, Z. Alam, M. Melone, G. Wasney, I. Kozi M. Vedadi, C. Arrowsmith, M. Sundstrom, J. Weigelt, A. Edwards, A. Boc R. Hui, M. Amani, Structural Genomics Consortium (Sgc)
Date :  08 Sep 05  (Deposition) - 20 Sep 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Structural Genomics Consortium, Ubiquitin, Ubiquitin-Conjugating Enzyme, Sgc, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
PubMed-ID: 17125854  |  Reference-DOI: 10.1016/J.MOLBIOPARA.2006.10.011

(-) Compounds

Molecule 1 - UBIQUITIN-CONJUGATING ENZYME E2
    Chains: A
    EC Number: 6.3.2.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TVL
    Expression System Strain: BL21 (DE3) CODONPLUS-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: TOXOPLASMA GONDII
    Organism Taxid: 5811

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1UNX10Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:73 , ASN A:79BINDING SITE FOR RESIDUE UNX A 147
02AC2SOFTWARELEU A:86 , ASP A:87 , ILE A:88BINDING SITE FOR RESIDUE UNX A 148
03AC3SOFTWAREGLN A:34 , GLU A:41 , UNX A:150BINDING SITE FOR RESIDUE UNX A 149
04AC4SOFTWAREASP A:42 , UNX A:149BINDING SITE FOR RESIDUE UNX A 150
05AC5SOFTWARESER A:105BINDING SITE FOR RESIDUE UNX A 151
06AC6SOFTWAREARG A:133 , THR A:137BINDING SITE FOR RESIDUE UNX A 152
07AC7SOFTWAREGLU A:9 , ILE A:99 , SER A:100BINDING SITE FOR RESIDUE UNX A 153
08AC8SOFTWARELEU A:119BINDING SITE FOR RESIDUE UNX A 154
09AC9SOFTWAREASP A:112BINDING SITE FOR RESIDUE UNX A 155
10BC1SOFTWAREHIS A:55 , LYS A:66BINDING SITE FOR RESIDUE UNX A 156

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AYV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:60 -Pro A:61

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AYV)

(-) Exons   (0, 0)

(no "Exon" information available for 2AYV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains --d2ayva1 A:1-146 Ubiquitin conjugating enzyme, UBC                                                                                                  SCOP domains
               CATH domains 2ayvA00 A:-1-146 Ubiquitin Conjugating Enzyme                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh....eeeee......eeeeeee..........eeeeeee..........eeee................hhhhh.......hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ayv A  -1 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 146
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AYV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2AYV)

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  Cis Peptide Bonds
    Tyr A:60 - Pro A:61   [ RasMol ]  
 

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