2AS9 - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF SPL PROTEASES FROM STAPHYLOCOCCUS AUREUS

Authors :   G. M. Popowicz, G. Dubin, J. Stec-Niemczyk, A. Czarny, A. Dubin, J. Potempa, T. A. Holak

Date :   23 Aug 05 (Deposition) - 06 Sep 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Serine Protease, Trypsin-Like Fold, Staphylococcus Aureus, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. M. Popowicz, G. Dubin, J. Stec-Niemczyk, A. Czarny, A. Dubin, J. Potempa, T. A. Holak
Functional And Structural Characterization Of Spl Proteases From Staphylococcus Aureus
J. Mol. Biol. V. 358 270 2006
PubMed-ID: 16516230 | Reference-DOI: 10.1016/J.JMB.2006.01.098
(for further references see the PDB file header)

Molecule 1 - SERINE PROTEASE
	Chains	:	A, B
	EC Number	:	3.4.21.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PQE60
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-210
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	1280
	Synonym	:	SPLC SERINE PROTEASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 7)

No.	Name	Count	Type	Full Name
1	ZN	7	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:114 , HIS B:201 , HIS B:205 , HOH B:667	BINDING SITE FOR RESIDUE ZN B 222
2	AC2	SOFTWARE	ASP A:110 , HIS A:205 , HIS A:207 , HOH A:783	BINDING SITE FOR RESIDUE ZN A 333
3	AC3	SOFTWARE	LYS A:32 , GLU A:86 , HIS A:206 , HOH A:676 , HOH A:911	BINDING SITE FOR RESIDUE ZN A 666
4	AC4	SOFTWARE	ASP A:44 , HOH A:915 , HOH A:928 , HOH A:929	BINDING SITE FOR RESIDUE ZN A 888
5	AC5	SOFTWARE	GLU A:100 , GLU B:86 , HIS B:206 , HOH B:749	BINDING SITE FOR RESIDUE ZN B 444
6	AC6	SOFTWARE	LYS A:32 , ASN A:99 , HOH A:726 , HOH A:746	BINDING SITE FOR RESIDUE ZN B 555
7	AC7	SOFTWARE	HOH A:898 , HIS B:207	BINDING SITE FOR RESIDUE ZN A 1777

(no "SS Bond" information available for 2AS9)

Asymmetric Unit

No.	Residues
1	Phe A:14	-	Pro A:15
2	Phe B:14	-	Pro B:15

(no "SAP(SNP)/Variant" information available for 2AS9)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	V8_HIS	PS00672	Serine proteases, V8 family, histidine active site.	SPLC_STAAU	61-75	2	A:26-40 B:26-40
1	V8_HIS	PS00672	Serine proteases, V8 family, histidine active site.	SPLC_STAA8	61-75	2	A:26-40 B:26-40

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	V8_HIS	PS00672	Serine proteases, V8 family, histidine active site.	SPLC_STAAU	61-75	1	A:26-40 -
1	V8_HIS	PS00672	Serine proteases, V8 family, histidine active site.	SPLC_STAA8	61-75	1	A:26-40 -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	V8_HIS	PS00672	Serine proteases, V8 family, histidine active site.	SPLC_STAAU	61-75	1	- B:26-40
1	V8_HIS	PS00672	Serine proteases, V8 family, histidine active site.	SPLC_STAA8	61-75	1	- B:26-40

(no "Exon" information available for 2AS9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:207
 aligned with SPLC_STAA8 | Q2FXC4 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:207
                                                                                                                                                                                                                                     239   
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235   |   
           SPLC_STAA8    36 AEKNVTQVKDTNIFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ---   -
               SCOP domains d2as9a_ A: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.......hhh.eee....eeeeee..eeeehhhhhhhh....eeee..hhhhh...eeeeeeeee.......eeeee..eeeeee..eee.hhh..............eeeeee...........eeeeeeeeeee..eeeee..........eee.....eeeee...........eeeee.hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------V8_HIS         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2as9 A   1 MEKNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQHHH 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain A from PDB  Type:PROTEIN  Length:207
 aligned with SPLC_STAAU | Q53782 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:207
                                                                                                                                                                                                                                     239   
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235   |   
           SPLC_STAAU    36 AEKNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ---   -
               SCOP domains d2as9a_ A: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.......hhh.eee....eeeeee..eeeehhhhhhhh....eeee..hhhhh...eeeeeeeee.......eeeee..eeeeee..eee.hhh..............eeeeee...........eeeeeeeeeee..eeeee..........eee.....eeeee...........eeeee.hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------V8_HIS         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2as9 A   1 MEKNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQHHH 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain B from PDB  Type:PROTEIN  Length:195
 aligned with SPLC_STAA8 | Q2FXC4 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:205
                                                                                                                                                                                                                                   239   
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237 |   
           SPLC_STAA8    38 KNVTQVKDTNIFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ---   -
               SCOP domains d2as9b_ B: automated matches                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.......hhh.eee....eeeeee..eeeehhhhhh......eeee..hhhhh...eeeeeeeee.......eeeee..eeeeee..eeehhhhh.............eeeeee.....--....eeeeeeeeeee..eeee....hhhhh..eee.....eeeee..--------.eeeee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------V8_HIS         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2as9 B   3 KNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPA--SFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYG--------YNGAVYFTPQIKDFIQKHIEQHHH 207
                                    12        22        32        42        52        62        72        82        92       102       112       122   |  |132       142       152       162       172  |      - |     192       202     
                                                                                                                                                     126  |                                           175      184                       
                                                                                                                                                        129

Chain B from PDB  Type:PROTEIN  Length:195
 aligned with SPLC_STAAU | Q53782 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:205
                                                                                                                                                                                                                                   239   
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237 |   
           SPLC_STAAU    38 KNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ---   -
               SCOP domains d2as9b_ B: automated matches                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.......hhh.eee....eeeeee..eeeehhhhhh......eeee..hhhhh...eeeeeeeee.......eeeee..eeeeee..eeehhhhh.............eeeeee.....--....eeeeeeeeeee..eeee....hhhhh..eee.....eeeee..--------.eeeee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------V8_HIS         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2as9 B   3 KNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPA--SFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYG--------YNGAVYFTPQIKDFIQKHIEQHHH 207
                                    12        22        32        42        52        62        72        82        92       102       112       122   |  |132       142       152       162       172  |      - |     192       202     
                                                                                                                                                     126  |                                           175      184                       
                                                                                                                                                        129

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Trypsin-like serine proteases (1752)

Superfamily: Trypsin-like serine proteases (1752)

Family: automated matches (71)

Protein domain: automated matches (71)

Staphylococcus aureus [TaxId: 1280] (2)

1a	d2as9a_	A:
1b	d2as9b_	B:

(no "CATH Domain" information available for 2AS9)

(no "Pfam Domain" information available for 2AS9)

Asymmetric Unit(hide GO term definitions)

Chain A,B (SPLC_STAAU | Q53782)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A,B (SPLC_STAA8 | Q2FXC4)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	3.4.21.-
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(no "Entries Sharing at Least One Protein Chain" available for 2AS9)

1agj	PROTEASE WITH SIMILAR FOLD, FROM THE SAME SPECIES
1qy6	PROTEASE WITH SIMILAR FOLD, FROM THE SAME SPECIES

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

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