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(-) Description

Title :  X-RAY STRUCTURE OF AN ANKYRIN REPEAT FAMILY PROTEIN Q5ZSV0 FROM LEGIONELLA PNEUMOPHILA. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LGR21.
 
Authors :  A. P. Kuzin, Y. Chen, T. Acton, R. Xiao, K. Conover, C. Ma, R. Kellie, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  01 Aug 05  (Deposition) - 16 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  X-Ray Structure, Nesg, Q5Zsv0, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, Y. Chen, T. Acton, R. Xiao, K. Conover, C. Ma, R. Kellie, G. T. Montelione, L. Tong, J. F. Hunt
X-Ray Structure Of An Ankyrin Repeat Family Protein Q5Zsv0 From Legionella Pneumophila.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANKYRIN REPEAT FAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3) + MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 446

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2AJA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AJA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AJA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AJA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AJA)

(-) Exons   (0, 0)

(no "Exon" information available for 2AJA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
 aligned with Q5ZSV0_LEGPH | Q5ZSV0 from UniProtKB/TrEMBL  Length:368

    Alignment length:347
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       
         Q5ZSV0_LEGPH     3 NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349
               SCOP domains d2ajaa1 A:3-348 Hypothetical protein LPG2416                                                                                                                                                                                                                                                                                                              - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhh....hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..--......--hhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhh..hhhhhhh.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aja A   3 NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLmTLSYKEAIHIFLPGTKNmEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLL--SDEIVK--QAENYQAFRLAAENGHLHVLNRLCELAPTEImAmIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAmIQAENYYAFRWAAVGRGHHNVINFLLDCPVmLAYAEIHEFEYGEKYVNPFIARHVNRLKEmHDAFKLSNPDGVFDLVTKSECLQGFYmLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349
                                    12        22        32        42        52       |62        72        82        92       102       112 |  |  122  |    132       142       152   | | 162       172       182       192|      202       212       222 |     232       242       252 |     262       272       282       292       302       312       322       332       342       
                                                                  42-MSE            60-MSE                                               114  |  122  |                            156-MSE                              193-MSE                        224-MSE                       254-MSE                    281-MSE                                                                
                                                                                                                                            117     125                              158-MSE                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:345
 aligned with Q5ZSV0_LEGPH | Q5ZSV0 from UniProtKB/TrEMBL  Length:368

    Alignment length:355
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351     
         Q5ZSV0_LEGPH     2 CNLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYIN 356
               SCOP domains d2ajab_ B: Hypothetical protein LPG2416                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhh..hhhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..--......--....hhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhhhh........hhhhhhhhhhhhhhhhhh.hhhhh.------.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh..hhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2aja B   2 CNLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLmTLSYKEAIHIFLPGTKNmEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLL--SDEIVK--QAENYQAFRLAAENGHLHVLNRLCELAPTEImAmIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAmIQAENYYAFRWAAVGRGHHNVINFLLDCPVmLAYAEIHEFEYGEKYVNPFIARHVNRLKEmHDAFKLSNP------VTKSECLQGFYmLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYIN 356
                                    11        21        31        41|       51        61        71        81        91       101       111  |  | 121|  |   131       141       151    | |161       171       181       191 |     201       211       221  |    231       241       251  |    261 |     271       281       291       301       311       321       331       341       351     
                                                                   42-MSE            60-MSE                                               114  |  122  |                            156-MSE                              193-MSE                        224-MSE                       254-MSE  263    270        281-MSE                                                                       
                                                                                                                                             117     125                              158-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AJA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AJA)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2AJA)

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