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(-) Description

Title :  MJ0158, APO FORM
 
Authors :  J. T. Kaiser, K. Gromadski, M. Rother, H. Engelhardt, M. V. Rodnina, M. C
Date :  24 Jul 05  (Deposition) - 04 Oct 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Selenocysteine Synthase, Plp, Pyridoxal Phosphate, Homo- Oligomerization, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. T. Kaiser, K. Gromadski, M. Rother, H. Engelhardt, M. V. Rodnina, M. C. Wahl
Structural And Functional Investigation Of A Putative Archaeal Selenocysteine Synthase
Biochemistry V. 44 13315 2005
PubMed-ID: 16201757  |  Reference-DOI: 10.1021/BI051110R

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN MJ0158
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7-7
    Expression System Strain: BL21(DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MJ0158
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1SO410Ligand/IonSULFATE ION
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1SO420Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:84 , THR A:85 , SER A:205 , ASP A:207 , LYS A:208 , ARG A:214 , GLY A:215 , HOH A:1024 , HOH A:1121 , HOH A:1352BINDING SITE FOR RESIDUE SO4 A 1001
02AC2SOFTWAREHIS A:111 , PRO A:112 , SER A:113 , HOH A:1019 , HOH A:1026 , HOH A:1083 , HOH A:1091 , HOH A:1214BINDING SITE FOR RESIDUE SO4 A 1002
03AC3SOFTWAREHIS A:111 , THR A:150 , MET A:151 , HOH A:1124 , HOH A:1213 , HOH A:1358BINDING SITE FOR RESIDUE SO4 A 1003
04AC4SOFTWAREARG A:116 , LYS A:119 , ASN A:166 , LYS A:169 , LYS A:234BINDING SITE FOR RESIDUE SO4 A 1004
05AC5SOFTWAREARG A:294 , HOH A:1248BINDING SITE FOR RESIDUE SO4 A 1005
06AC6SOFTWARELYS A:130 , VAL A:131 , LYS A:163 , HOH A:1054 , HOH A:1139 , HOH A:1140BINDING SITE FOR RESIDUE SO4 A 1006
07AC7SOFTWARELYS A:124 , ARG A:303 , HOH A:1204BINDING SITE FOR RESIDUE SO4 A 1007
08AC8SOFTWAREASP A:139 , LYS A:140 , LYS A:171 , HOH A:1062 , HOH A:1271BINDING SITE FOR RESIDUE SO4 A 1008
09AC9SOFTWARETHR A:295 , PRO A:296 , ARG A:344 , HOH A:1106BINDING SITE FOR RESIDUE SO4 A 1009
10BC1SOFTWAREARG A:27 , ARG A:350 , ARG A:354 , LYS A:369BINDING SITE FOR RESIDUE SO4 A 1010

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AEU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:108 -Pro A:109

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AEU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AEU)

(-) Exons   (0, 0)

(no "Exon" information available for 2AEU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:366
 aligned with Y158_METJA | Q57622 from UniProtKB/Swiss-Prot  Length:374

    Alignment length:366
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368      
           Y158_METJA     9 LRLEKARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFKS 374
               SCOP domains d2aeua1 A:9-374 Hypothetical protein MJ0158                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhee..........hhhhhhhhh..hhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhh..eeeee.hhhhhhh.....eeeeee.........hhhhhhhhhhhhhhhh..eeee..hhhhhhhhh...hhhhhh..eeeee..........eeeeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....eeeeeee...eeeeeeee.hhhhhhhhhhhhhhhhhhhhhee.............eeee..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2aeu A   9 LRLEKARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFKS 374
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AEU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AEU)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Y158_METJA | Q57622)
molecular function
    GO:0004125    L-seryl-tRNASec selenium transferase activity    Catalysis of the reaction: L-seryl-tRNA(Sec) + selenophosphate = L-selenocysteinyl-tRNA(Sec) + H2O + phosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0097056    selenocysteinyl-tRNA(Sec) biosynthetic process    The chemical reactions and pathways resulting in the formation of selenocysteinyl-tRNA(Sec). This process occurs through the following steps: a unique serine-tRNA with a UGA recognizing anticodon is first aminoacylated with serine; this is then phosphorylated by phosphoseryl-tRNA[Ser]Sec kinase; lastly, selenium is swapped for the phosphate on the serine.

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 Related Entries

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        Y158_METJA | Q57622: 2aev

(-) Related Entries Specified in the PDB File

2aev NABH4-REDUCED FORM