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(-) Description

Title :  X-RAY STRUCTURE OF A PUTATIVE ADENYLATE CYCLASE Q87NV8 FROM VIBRIO PARAHAEMOLYTICUS AT THE 2.25 A RESOLUTION. NORTHEAST STRUCTURAL GENOMICS TARGET VPR19.
 
Authors :  A. P. Kuzin, M. Abashidze, S. M. Vorobiev, F. Forouhar, Y. Chen, T. Acton, R. Xiao, K. Conover, L. -C. Ma, K. E. Cunningham, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  18 Jul 05  (Deposition) - 02 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nesg, Vpr19, Q87Nv8, Adenylate Cyclase, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  

PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE ADENYLATE CYCLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Gene: VP1760
    Organism Scientific: VIBRIO PARAHAEMOLYTICUS
    Organism Taxid: 670

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2PO45Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU B:14 , LYS B:16 , LYS B:78 , GLU B:138 , SER B:174 , TYR B:175 , PO4 B:302 , HOH B:327BINDING SITE FOR RESIDUE PO4 B 301
2AC2SOFTWAREGLU B:14 , ARG B:65 , LYS B:78 , ARG B:115 , GLU B:138 , PO4 B:301 , HOH B:323 , HOH B:348 , HOH B:368BINDING SITE FOR RESIDUE PO4 B 302
3AC3SOFTWARELYS A:16 , LYS A:78 , GLU A:138 , SER A:174 , TYR A:175 , PO4 A:304BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWAREGLU A:14 , ARG A:65 , ARG A:115 , GLU A:138 , PO4 A:303BINDING SITE FOR RESIDUE PO4 A 304
5AC5SOFTWAREARG B:18 , ARG B:170 , GLU B:171 , HIS B:172 , ARG B:173BINDING SITE FOR RESIDUE PO4 B 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ACA)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:68 -Pro A:69
2Gly A:79 -Pro A:80
3Gln B:68 -Pro B:69
4Gly B:79 -Pro B:80

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ACA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ACA)

(-) Exons   (0, 0)

(no "Exon" information available for 2ACA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with Q87NV8_VIBPA | Q87NV8 from UniProtKB/TrEMBL  Length:181

    Alignment length:174
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177    
         Q87NV8_VIBPA     8 QGQFEVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCEATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGHFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA 181
               SCOP domains d2acaa1 A:8-181 Putative adenylate cyclase VP1760                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhh...eeeeeeeeeeeeeee...hhhhhh..eeeeeeee...eeeeeee......eeeee..hhhhhhhhhhhh..eeeeeeeeeeeeeee..eeeeeeee...eeeeeeeeee..hhhhhhhhhhhhhhhhhh..hhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2aca A   8 QGQFEVELKYRVKNHDAFLNmVKQIEHEVmFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCEATNITKLDSAQSmLENmGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGHFAEFAImTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA 181
                                    17        27|       37        47        57        67        77        87        97 |   | 107       117       127       137    |  147       157       167       177    
                                               28-MSE   37-MSE                                                        99-MSE                                    142-MSE                                   
                                                                                                                         103-MSE                                                                          


Chain B from PDB  Type:PROTEIN  Length:174
 aligned with Q87NV8_VIBPA | Q87NV8 from UniProtKB/TrEMBL  Length:181

    Alignment length:174
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177    
         Q87NV8_VIBPA     8 QGQFEVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCEATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGHFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA 181
               SCOP domains d2acab_ B: Putative adenylate cyclase VP1760                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhh....eeeeeeeeeeeeeee.....hhhhh.eeeeeeee...eeeeeee......eeeee..hhhhhhhhhhhh..eeeeeeeeeeeeeee..eeeeeeee...eeeeeeeeee.hhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2aca B   8 QGQFEVELKYRVKNHDAFLNmVKQIEHEVmFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCEATNITKLDSAQSmLENmGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGHFAEFAImTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA 181
                                    17        27|       37        47        57        67        77        87        97 |   | 107       117       127       137    |  147       157       167       177    
                                               28-MSE   37-MSE                                                        99-MSE                                    142-MSE                                   
                                                                                                                         103-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ACA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ACA)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2ACA)

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  Cis Peptide Bonds
    Gln A:68 - Pro A:69   [ RasMol ]  
    Gln B:68 - Pro B:69   [ RasMol ]  
    Gly A:79 - Pro A:80   [ RasMol ]  
    Gly B:79 - Pro B:80   [ RasMol ]  
 

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  2aca
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  Q87NV8_VIBPA | Q87NV8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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