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(-) Description

Title :  THE CRYSTAL STRUCTURE OF COMPETENCE/DAMAGE INDUCIBLE PROTEIN CIHA FROM AGROBACTERIUM TUMEFACIENS
 
Authors :  V. V. Lunin, E. Evdokimova, M. Kudritska, Y. Kim, A. Joachimiak, A. Edwa A. Savchenko, Midwest Center For Structural Genomics (Mcsg)
Date :  12 Jul 05  (Deposition) - 19 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc5759, Atc1417, Mcsg, Competence, Damage Inducible, Protein Structure Initiative, Midwest Center For Structural Genomics, Psi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. V. Lunin, E. Evdokimova, M. Kudritska, Y. Kim, A. Joachimiak, A. Edwards, A. Savchenko
The Crystal Structure Of Competence/Damage Inducible Protei Ciha From Agrobacterium Tumefaciens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - COMPETENCE/DAMAGE-INDUCIBLE PROTEIN CINA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET15B
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: STR. C58

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:145 , GLY B:46 , SER B:47 , SER B:48BINDING SITE FOR RESIDUE CL B 170
2AC2SOFTWAREGLY A:46 , SER A:47 , SER A:48 , ARG B:145BINDING SITE FOR RESIDUE CL A 170

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A9S)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:109 -Pro A:110
2Gly B:109 -Pro B:110

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2A9S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2A9S)

(-) Exons   (0, 0)

(no "Exon" information available for 2A9S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
 aligned with A9CJ26_AGRFC | A9CJ26 from UniProtKB/TrEMBL  Length:169

    Alignment length:167
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       
         A9CJ26_AGRFC     1 MSLFPGDIEELARRIITDFTPLGLMVSTAESCTGGLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQMAHGALYRSRANFAVAVTGIAGPGGGSAEKPVGLVHLATKARNGNVLHHEMRYGDIGRTEIRLATVRTALEMLIALNQAG 167
               SCOP domains d2a9sa1 A:1-167 Competence/damage-inducible protein CinA                                                                                                                SCOP domains
               CATH domains 2a9sA00 A:1-167 CinA-like domains                                                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhh...hhhh.eeeeeee.hhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeee..............eeeeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a9s A   1 MSLFPGDIEELARRIITDFTPLGLMVSTAESCTGGLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQMAHGALYRSRANFAVAVTGIAGPGGGSAEKPVGLVHLATKARNGNVLHHEMRYGDIGRTEIRLATVRTALEMLIALNQAG 167
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       


Chain B from PDB  Type:PROTEIN  Length:165
 aligned with A9CJ26_AGRFC | A9CJ26 from UniProtKB/TrEMBL  Length:169

    Alignment length:165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     
         A9CJ26_AGRFC     1 MSLFPGDIEELARRIITDFTPLGLMVSTAESCTGGLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQMAHGALYRSRANFAVAVTGIAGPGGGSAEKPVGLVHLATKARNGNVLHHEMRYGDIGRTEIRLATVRTALEMLIALNQ 165
               SCOP domains d2a9sb_ B: automated matches                                                                                                                                          SCOP domains
               CATH domains 2a9sB00 B:1-165 CinA-like domains                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh...hhhh.eeeeee..hhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeee..............eeeeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a9s B   1 MSLFPGDIEELARRIITDFTPLGLMVSTAESCTGGLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQMAHGALYRSRANFAVAVTGIAGPGGGSAEKPVGLVHLATKARNGNVLHHEMRYGDIGRTEIRLATVRTALEMLIALNQ 165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A9S)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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