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Title :   CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION SO2946 FROM SHEWANELLA ONEIDENSIS MR-1

Authors :   B. Nocek, L. Bigelow, J. Abdullah, F. Collart, A. Joachimiak, Midwest For Structural Genomics (Mcsg)

Date :   01 Jul 05 (Deposition) - 16 Aug 05 (Release) - 19 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.02

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Shewanella Oneidensis Mr-1, Hypothetical Protein, So2946, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Nocek, L. Bigelow, J. Abdullah, A. Joachimiak
Structure Of So2946 Orphan From Shewanella Oneidensis Shows "Jelly-Roll" Fold With Carbohydrate-Binding Module.
J. Struct. Funct. Genom. V. 9 1 2008
PubMed-ID: 18566914 | Reference-DOI: 10.1007/S10969-008-9040-0

Molecule 1 - HYPOTHETICAL PROTEIN SO2946
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SO2946
	Organism Scientific	:	SHEWANELLA ONEIDENSIS
	Organism Taxid	:	211586
	Strain	:	MR-1

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 24)

No.	Name	Count	Type	Full Name
1	MG	3	Ligand/Ion	MAGNESIUM ION
2	MSE	21	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:54 , PHE A:88 , GLY A:89 , ASP A:247	BINDING SITE FOR RESIDUE MG A 701
2	AC2	SOFTWARE	ASP B:54 , PHE B:88 , GLY B:89 , ASP B:247	BINDING SITE FOR RESIDUE MG B 701
3	AC3	SOFTWARE	ASP C:54 , PHE C:88 , GLY C:89 , ASP C:247	BINDING SITE FOR RESIDUE MG C 701

(no "SS Bond" information available for 2A5Z)

(no "Cis Peptide Bond" information available for 2A5Z)

(no "SAP(SNP)/Variant" information available for 2A5Z)

(no "PROSITE Motif" information available for 2A5Z)

(no "Exon" information available for 2A5Z)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:239
 aligned with Q8ED25_SHEON | Q8ED25 from UniProtKB/TrEMBL  Length:262

    Alignment length:239
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253         
         Q8ED25_SHEON    24 TTPGLMSPSEKLKLSTLTTSIATSDFYASYDFMMHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGMLMAIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENGNAFGGIVKASAATETGSTYALSTSTWYICKFKMLTDDRFKVTLYSDSGTQLYSYTSTAAMFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAKV 262
               SCOP domains d2a5za1 A:24-262 Hypothetical protein SO2946                                                                                                                                                                                                    SCOP domains
               CATH domains 2a5zA00 A:24-262  [code=2.60.120.200, no name defined]                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh........eeeeee..........ee..eeeeee...ee...eee..eeee..ee.......eeeeeehhhhhhhhhh.eeeeeee........eeeeeeeee.......eeeeeee..eeeeeeee..eeeeeeeeee.....eeeeeeee.....eeeeeee....eeeeee............eeeeeeeee..........eeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a5z A  24 TTPGLmSPSEKLKLSTLTTSIATSDFYASYDFmmHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGmLmAIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENGNAFGGIVKASAATETGSTYALSTSTWYICKFKmLTDDRFKVTLYSDSGTQLYSYTSTAAmFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAKV 262
                                 |  33        43        53  ||    63        73        83        93       103   | | 113       123       133       143       153       163       173       183       193       203       213    |  223       233       243       253         
                                 |                         56-MSE                                            107-MSE                                                                             191-MSE                    218-MSE                                        
                                29-MSE                      57-MSE                                             109-MSE

Chain B from PDB  Type:PROTEIN  Length:239
 aligned with Q8ED25_SHEON | Q8ED25 from UniProtKB/TrEMBL  Length:262

    Alignment length:239
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253         
         Q8ED25_SHEON    24 TTPGLMSPSEKLKLSTLTTSIATSDFYASYDFMMHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGMLMAIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENGNAFGGIVKASAATETGSTYALSTSTWYICKFKMLTDDRFKVTLYSDSGTQLYSYTSTAAMFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAKV 262
               SCOP domains d2a5zb_ B: Hypothetical protein SO2946                                                                                                                                                                                                          SCOP domains
               CATH domains 2a5zB00 B:24-262  [code=2.60.120.200, no name defined]                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh........eeeeee..........ee..eeeeee...ee...eee..eeee..ee.......eeeeeehhhhhhhhhh.eeeeeee........eeeeeeeee.......eeeeeee..eeeeeeee..eeeee...ee.....eeeeeeee.....eeeeeee....eeeeee............eeeeeeeee..........eeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a5z B  24 TTPGLmSPSEKLKLSTLTTSIATSDFYASYDFmmHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGmLmAIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENGNAFGGIVKASAATETGSTYALSTSTWYICKFKmLTDDRFKVTLYSDSGTQLYSYTSTAAmFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAKV 262
                                 |  33        43        53  ||    63        73        83        93       103   | | 113       123       133       143       153       163       173       183       193       203       213    |  223       233       243       253         
                                29-MSE                     56-MSE                                            107-MSE                                                                             191-MSE                    218-MSE                                        
                                                            57-MSE                                             109-MSE

Chain C from PDB  Type:PROTEIN  Length:244
 aligned with Q8ED25_SHEON | Q8ED25 from UniProtKB/TrEMBL  Length:262

    Alignment length:244
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258    
         Q8ED25_SHEON    19 PLATETTPGLMSPSEKLKLSTLTTSIATSDFYASYDFMMHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGMLMAIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENGNAFGGIVKASAATETGSTYALSTSTWYICKFKMLTDDRFKVTLYSDSGTQLYSYTSTAAMFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAKV 262
               SCOP domains d2a5zc_ C: Hypothetical protein SO2946                                                                                                                                                                                                               SCOP domains
               CATH domains 2a5zC00 C:19-262  [code=2.60.120.200, no name defined]                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhh........eeeeee..........ee..eeeeee...ee...eee..eeee..ee.......eeeeee.....hhhhh.eeeeeee........eeeeeeeee.......eeeeeee..eeeeeeee..eeeee...ee.....eeeeeeee.....eeeeeee....eeeeee............eeeeeeeee..........eeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2a5z C  19 PLATETTPGLmSPSEKLKLSTLTTSIATSDFYASYDFmmHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGmLmAIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENGNAFGGIVKASAATETGSTYALSTSTWYICKFKmLTDDRFKVTLYSDSGTQLYSYTSTAAmFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAKV 262
                                    28|       38        48       |58        68        78        88        98       108|      118       128       138       148       158       168       178       188  |    198       208       218       228       238       248       258    
                                     29-MSE                     56-MSE                                            107-MSE                                                                             191-MSE                    218-MSE                                        
                                                                 57-MSE                                             109-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Concanavalin A-like lectins/glucanases (797)

Superfamily: Concanavalin A-like lectins/glucanases (797)

Family: SO2946-like (1)

Protein domain: Hypothetical protein SO2946 (1)

Shewanella oneidensis [TaxId: 70863] (1)

1a	d2a5za1	A:24-262
1b	d2a5zb_	B:
1c	d2a5zc_	C:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Jelly Rolls (1293)

Homologous Superfamily: [code=2.60.120.200, no name defined] (421)

Shewanella oneidensis mr-1. Organism_taxid: 211586. Strain: mr-1. (1)

1a	2a5zA00	A:24-262
1b	2a5zB00	B:24-262
1c	2a5zC00	C:19-262

(no "Pfam Domain" information available for 2A5Z)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (Q8ED25_SHEON | Q8ED25)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Asymmetric/Biological Unit
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Ligands, Modified Residues, Ions (2, 24)

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